Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C02_e587_06.seq
         (1511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   6.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   9.1  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 455 GLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 568
           G  +G  P    P+ A    +L  LK+E    RY+ +R
Sbjct: 11  GRGNGGTPEEKRPRTAFSGEQLARLKREFAENRYLTER 48


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 333 EWPFDIKRRTRLLVRTPCFI 274
           EWP  +++R  L +   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 333 EWPFDIKRRTRLLVRTPCFI 274
           EWP  +++R  L +   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 746 RRRNPRSAVKKRSNAGVRLQCVTLRALATVRRKK 847
           RR+     +KK    G+R +CV       V+RK+
Sbjct: 236 RRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKE 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 299,760
Number of Sequences: 438
Number of extensions: 5947
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52874250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)