Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C02_e587_06.seq
         (1511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   259   4e-69
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             255   5e-68
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    33   0.49 
At2g39950.1 68415.m04909 expressed protein                             30   3.5  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    29   6.1  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    29   8.0  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  259 bits (634), Expect = 4e-69
 Identities = 141/241 (58%), Positives = 162/241 (67%), Gaps = 9/241 (3%)
 Frame = +2

Query: 89  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 268
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 269 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 442
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 443 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 616
            ++PGLTD E PR  GPKRASKIRKLFNLKKEDDVR YV   +R    K+GKE +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----K 176

Query: 617 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLA-----QRRRNPRSAVKKR 781
           APKIQRLVTP+ LQ                 S  ADY KLLA     QR R   S  KKR
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKR 236

Query: 782 S 784
           S
Sbjct: 237 S 237


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  255 bits (625), Expect = 5e-68
 Identities = 138/241 (57%), Positives = 162/241 (67%), Gaps = 9/241 (3%)
 Frame = +2

Query: 89  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 268
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 269 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 442
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 443 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 616
            ++PGLTD E PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK+ +    K
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----K 176

Query: 617 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLA-----QRRRNPRSAVKKR 781
           APKIQRLVTP+ LQ                 S  ADY KLLA     QR R   S  KKR
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKR 236

Query: 782 S 784
           S
Sbjct: 237 S 237


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 458 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL--LPAKEGKENAK 604
           + +G V ++   ++A +  K   +KKEDDVR+  +KRL  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At2g39950.1 68415.m04909 expressed protein
          Length = 636

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 146 PPLQITSDIPLPGMKRSTS*LRSPRPIXCSP 54
           PPL +   IP+PG   S+S  +   PI C P
Sbjct: 485 PPLPLVHHIPIPGSSSSSSQQQMMIPIMCDP 515


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 494 KRASKIRKLFN--LKKEDDVRRYVVKRLLPA-KEGKENAK 604
           KR + I KL +  L++ +D+R Y+V  LLP    G  NAK
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +2

Query: 356 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFNL 529
           G ++    RG +   + S  AL  +  GA   PG      ++P R+G  R +KIRKL  +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233

Query: 530 KKEDDVRRYVVKRLLPAKEG 589
           K + ++   ++K  LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,511,326
Number of Sequences: 28952
Number of extensions: 424198
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)