Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C01_e579_05.seq
         (1591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   133   7e-32
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   5.4  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  133 bits (321), Expect = 7e-32
 Identities = 72/155 (46%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPLF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 408 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXD-EPPPKRPNTLRAGTQHCYQAC 584
           K TA  +FK+L KYRPET                     +   K+P  ++ G  H   A 
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVV-AL 142

Query: 585 LRXXXAQLVVIRS*RRPNRTXASFLPALCXKMVXP 689
           +    A+LV+I S   P      FLPALC KM  P
Sbjct: 143 IEAKKAKLVLIASDVDPIELVV-FLPALCKKMGVP 176


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/49 (28%), Positives = 15/49 (30%)
 Frame = +3

Query: 1389 PXLPSSXXLXSXXXXXXFFXXPXXLXSXSCXPXXSXPPXPPXXXLSXPI 1535
            P +  S    S          P    S SC    S PP      LS PI
Sbjct: 86   PIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPI 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,851
Number of Sequences: 5004
Number of extensions: 49146
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 897924822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)