Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C01_e579_05.seq
         (1591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   123   3e-28
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   122   1e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    99   5e-21
02_05_0584 - 30135768-30135790,30136104-30136866                       32   1.4  
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645...    29   7.7  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  123 bits (297), Expect = 3e-28
 Identities = 69/154 (44%), Positives = 85/154 (55%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPLFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22  NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81

Query: 408 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTQHCYQACL 587
           K  A  LFK+L KYRPE                         K+P  ++ G  H     +
Sbjct: 82  KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNH-VTYLI 139

Query: 588 RXXXAQLVVIRS*RRPNRTXASFLPALCXKMVXP 689
               AQLVVI     P      +LPALC KM  P
Sbjct: 140 EQSKAQLVVIAHDVDPIELVV-WLPALCRKMEVP 172


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  122 bits (293), Expect = 1e-27
 Identities = 68/151 (45%), Positives = 84/151 (55%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPLFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6   NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65

Query: 408 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTQHCYQACL 587
           K  A  LFK+L KYRPE                         K+P  ++ G  H     +
Sbjct: 66  KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNH-VTYLI 123

Query: 588 RXXXAQLVVIRS*RRPNRTXASFLPALCXKM 680
               AQLVVI     P      +LPALC KM
Sbjct: 124 EQSKAQLVVIAHDVDPIELVV-WLPALCRKM 153


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score =   99 bits (238), Expect = 5e-21
 Identities = 63/154 (40%), Positives = 81/154 (52%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPLFEKR K F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23  NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82

Query: 408 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTQHCYQACL 587
           K       ++L++ + E                         K+P  ++ G  H     +
Sbjct: 83  KNLGCQKERLLKRAQAEAEGKTVEA-----------------KKPIVVKYGLDH-VTYLI 124

Query: 588 RXXXAQLVVIRS*RRPNRTXASFLPALCXKMVXP 689
               AQLVVI     P      +LPALC KM  P
Sbjct: 125 EQSKAQLVVIAHDVDPIELVV-WLPALCRKMEIP 157


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1087 PFLLRPXSTFPXPXSXLXXXXXXPSXXSLSXPFXXSFPX-XPLPXSP 1224
            PF L P   FP P S        PS  S   PF   FP   P P SP
Sbjct: 63   PFPLFPFLMFPIPGSPAGAGGAPPSAGSGGFPFPLPFPLPLPAPGSP 109


>11_03_0212 -
           11761856-11762037,11762302-11762398,11763571-11764545,
           11766172-11766263,11766450-11766510
          Length = 468

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 255 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 422
           N  +GQD +    ++ +V+   Y  I Q+ + +L  RLK  PP    + TQ + K    K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411

Query: 423 GLFKILEK 446
               +L+K
Sbjct: 412 AAKDVLQK 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,228,650
Number of Sequences: 37544
Number of extensions: 424795
Number of successful extensions: 1191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5151335952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)