Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C01_e579_05.seq
         (1591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   6e-35
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        48   2e-05
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.090
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.4  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  146 bits (353), Expect = 6e-35
 Identities = 75/154 (48%), Positives = 93/154 (60%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPL EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 408 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTQHCYQACL 587
           + +   LFK+L KYRPET                   +E P K+P  ++ G  H   + +
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINH-ITSLV 147

Query: 588 RXXXAQLVVIRS*RRPNRTXASFLPALCXKMVXP 689
               AQLVVI     P      +LPALC KM  P
Sbjct: 148 ENKKAQLVVIAHDVDPIEIVV-WLPALCRKMQVP 180


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 48.4 bits (110), Expect = 2e-05
 Identities = 31/88 (35%), Positives = 39/88 (44%)
 Frame = +3

Query: 426 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTQHCYQACLRXXXAQ 605
           LFK+L KYRPET                   +E P K+P  ++ G  H   + +    AQ
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINH-ITSLVENKKAQ 62

Query: 606 LVVIRS*RRPNRTXASFLPALCXKMVXP 689
           LVVI     P      +LPALC KM  P
Sbjct: 63  LVVIAHDVDPIEIVV-WLPALCRKMQVP 89


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 35.9 bits (79), Expect = 0.090
 Identities = 39/138 (28%), Positives = 57/138 (41%)
 Frame = +2

Query: 164  DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 343
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 344  GCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQARN*GSQERASKESRRSQGC*ER* 523
              VT SS+     +P H   R      S       Q R   S  R  ++ RRS+G   R 
Sbjct: 1035 QRVTKSSKERPRKRPRHQS-RERRPSSSPPRRSRPQ-RTSPSPRRTPEDRRRSRG--SRR 1090

Query: 524  AATEKAKHPTRWNPTLLP 577
            + +   + P R +P+  P
Sbjct: 1091 SPSPPKREPRRRSPSASP 1108


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 170 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 265
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,535,598
Number of Sequences: 59808
Number of extensions: 401027
Number of successful extensions: 2296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2284
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5211572988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)