Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C01_e579_05.seq
         (1591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   142   5e-34
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   127   2e-29
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   124   2e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   103   4e-22
AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    31   2.3  
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    31   2.3  
AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cel...    31   2.3  
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    31   2.3  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  142 bits (345), Expect = 5e-34
 Identities = 74/154 (48%), Positives = 91/154 (59%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 408 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTQHCYQACL 587
             +A+  FK+L+KYRPE+                    E   KRPNT+R G  +     +
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGV-NTITRLV 148

Query: 588 RXXXAQLVVIRS*RRPNRTXASFLPALCXKMVXP 689
               AQLV+I     P       LPALC K   P
Sbjct: 149 ETRRAQLVLIAHDVNP-LEIVLHLPALCRKYNVP 181


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  127 bits (306), Expect = 2e-29
 Identities = 73/154 (47%), Positives = 90/154 (58%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 408 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTQHCYQACL 587
             +A+  FK+L+KYRPE+                        KRPNT+R G  +     +
Sbjct: 90  SQSARQAFKLLDKYRPESTEVT--------------------KRPNTVRHGV-NTITRLV 128

Query: 588 RXXXAQLVVIRS*RRPNRTXASFLPALCXKMVXP 689
               AQLV+I     P       LPALC K   P
Sbjct: 129 ETRRAQLVLIAHDVNP-LEIVLHLPALCRKYNVP 161


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  124 bits (298), Expect = 2e-28
 Identities = 53/78 (67%), Positives = 66/78 (84%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 408 KTTAKGLFKILEKYRPET 461
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  103 bits (247), Expect = 4e-22
 Identities = 44/60 (73%), Positives = 52/60 (86%)
 Frame = +3

Query: 228 NPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 407
           NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 164 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 343
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 31  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88

Query: 344 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 439
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 89  GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 164 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 343
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 344 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 439
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


>AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform b protein.
          Length = 512

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 164 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 343
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 344 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 439
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 164 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 343
           D ++    +T G ES  QE+               P   A++ S P +   E+   P S 
Sbjct: 68  DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125

Query: 344 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 439
           G   AS+Q++ A+    P++  +   +  QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,704,722
Number of Sequences: 27780
Number of extensions: 298652
Number of successful extensions: 587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4608230712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)