Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_C01_e579_05.seq
         (1591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   3.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   7.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   7.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 251 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASSQSAAA 379
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS +  A
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGA 428


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 251 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASSQSAAA 379
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS +  A
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGA 428


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 221 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 313
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 221 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 313
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,739
Number of Sequences: 438
Number of extensions: 4142
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55984500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)