Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B12_e666_04.seq
         (1475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    26   0.72 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   6.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   6.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   8.8  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 751 ILTIMXTNCXHNSNFNRKDPLFYN 822
           I++ +  N  HN+N+N+K  L+YN
Sbjct: 314 IISSLSNNTIHNNNYNKK--LYYN 335


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 388 IIQCLMCSPLYHLFVIPKY 332
           +I CL+CSP  H    P +
Sbjct: 10  LITCLICSPSVHCGTRPSF 28


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 757 TIMXTNCXHNSNFNRKDPLFYN 822
           TI   N  +N+N+N    L+YN
Sbjct: 89  TIHNNNNYNNNNYNNYKKLYYN 110


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 835 NPYPNYKIKDLS 800
           NPYPN+++ D++
Sbjct: 93  NPYPNWEMNDIN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 303,545
Number of Sequences: 438
Number of extensions: 5973
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51438750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)