Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B11_e658_03.seq
         (1537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   398   e-113
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   398   e-113
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   9.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  398 bits (980), Expect = e-113
 Identities = 195/278 (70%), Positives = 216/278 (77%), Gaps = 2/278 (0%)
 Frame = +1

Query: 142 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 321
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 322 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 501
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 502 XXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRGFG 681
                  TSLCFVYPLDFARTRLAADVGK  G+REFTGLGNC++KIFK+DG+TGLYRGFG
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 682 VSVQGIIIYRAAYFGFYDTARGMLPDPKNTPIVISWAIAQ--PSPQSPVSSRIHSTRFVX 855
           VSVQGIIIYRAAYFGFYDTARGMLPDPK TP +ISW IAQ   +    VS    + R   
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRM 240

Query: 856 V**CSPXRARANFXQEHHTLXGDIGXTEGGAXXFKGXF 969
           +      ++   +    H     I  TEGG   FKG F
Sbjct: 241 MMQSGRAKSEILYKSTLH-CWATIYKTEGGNAFFKGAF 277



 Score = 32.7 bits (71), Expect = 0.009
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 890 IXYKNTIHXWATLAXLRXEPPXLRAPXXXVLKGTGG 997
           I YK+T+H WAT+          +     +L+GTGG
Sbjct: 251 ILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGG 286



 Score = 27.1 bits (57), Expect = 0.43
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 229 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 387
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  398 bits (980), Expect = e-113
 Identities = 195/278 (70%), Positives = 216/278 (77%), Gaps = 2/278 (0%)
 Frame = +1

Query: 142 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 321
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 322 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 501
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 502 XXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRGFG 681
                  TSLCFVYPLDFARTRLAADVGK  G+REFTGLGNC++KIFK+DG+TGLYRGFG
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 682 VSVQGIIIYRAAYFGFYDTARGMLPDPKNTPIVISWAIAQ--PSPQSPVSSRIHSTRFVX 855
           VSVQGIIIYRAAYFGFYDTARGMLPDPK TP +ISW IAQ   +    VS    + R   
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRM 240

Query: 856 V**CSPXRARANFXQEHHTLXGDIGXTEGGAXXFKGXF 969
           +      ++   +    H     I  TEGG   FKG F
Sbjct: 241 MMQSGRAKSEILYKSTLH-CWATIYKTEGGNAFFKGAF 277



 Score = 32.7 bits (71), Expect = 0.009
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 890 IXYKNTIHXWATLAXLRXEPPXLRAPXXXVLKGTGG 997
           I YK+T+H WAT+          +     +L+GTGG
Sbjct: 251 ILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGG 286



 Score = 27.1 bits (57), Expect = 0.43
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 229 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 387
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 765 EHPHRHQLGHRATV 806
           EHPH+HQ  + A V
Sbjct: 19  EHPHQHQQHYGAAV 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,086
Number of Sequences: 438
Number of extensions: 5997
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53831250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)