Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B10_e650_04.seq
         (1538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0043 + 344084-344452,346672-347546,347635-348145                 33   0.46 
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34...    32   1.1  

>12_01_0043 + 344084-344452,346672-347546,347635-348145
          Length = 584

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 606 LPMKIDESIPIINGCLSCYFSRVCFSICLIGFGRTGR 716
           LP  +   I ++ GC  C+F+ VCF +C+  F  + R
Sbjct: 119 LPYPLVFLICLVAGCSICWFNTVCFVLCIRSFSSSNR 155


>11_01_0044 +
           340486-340854,341855-341911,343100-343974,344065-344398,
           345553-345645,345913-346062
          Length = 625

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 630 IPIINGCLSCYFSRVCFSICLIGFGRTGR 716
           I ++ GC  C+F+ VCF +C+  F  + R
Sbjct: 146 ICLVAGCSICWFNTVCFVLCIRSFSSSNR 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,278,534
Number of Sequences: 37544
Number of extensions: 621897
Number of successful extensions: 1243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4954100116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)