Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B10_e650_04.seq
         (1538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)                    29   7.5  
SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26)                   29   9.9  

>SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)
          Length = 195

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 302 KSKMAVFGLASAVAGFVKVRYLIDKAVIDNMVFRMHYRITSAILFLCCILV 454
           K +    G+ +A A    +   + +A+ID + +R  YRI  A+  + CILV
Sbjct: 144 KRRSLATGIVAAGASIGTLIGPVYQALIDGVGWRNSYRIIGALFSIACILV 194


>SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26)
          Length = 436

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 794 LAGYSYHQQCK-PKNHACRPKSYELFLPPSS 705
           L G++++ QC+ P N     ++Y+L LPP+S
Sbjct: 43  LPGFNHYGQCRGPNNTPWNKQTYKLSLPPAS 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,936,781
Number of Sequences: 59808
Number of extensions: 692015
Number of successful extensions: 1366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5012030779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)