Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B10_e650_04.seq
         (1538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family...    29   6.2  
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family...    29   6.2  

>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 725 LFLPPSSSKSNEANRKADPGKIA*KAPIDNRNGF 624
           +FLPP S++    N     GK+  KA  + RNGF
Sbjct: 554 VFLPPGSNQELADNSNGTEGKLDLKAKEEARNGF 587


>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 725 LFLPPSSSKSNEANRKADPGKIA*KAPIDNRNGF 624
           +FLPP S++    N     GK+  KA  + RNGF
Sbjct: 554 VFLPPGSNQELADNSNGTEGKLDLKAKEEARNGF 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,247,116
Number of Sequences: 28952
Number of extensions: 494678
Number of successful extensions: 1066
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)