Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B09_e642_03.seq
         (1576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    32   0.25 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   9.4  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 660 YTRIVYLGIFSVPCFALSAAXRDINSKFAQNNESQGPLRNSC 785
           Y R++ +GIFS P F  S + + INSK A+   +Q      C
Sbjct: 253 YKRLLSMGIFSEPDFHPSLSRQWINSKIAETKLTQRQFSRCC 294


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 219 ITFCKKKLHLDTGFRIIKKQTR*LKCKFYTYNTIHAPFNSALIN 88
           I  C  ++  D  FRI+KK+ +  +     Y TIHA  + A  N
Sbjct: 591 IKSCYDRIKQDLMFRIVKKKLKDPEFVIRKYATIHATSDRATKN 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,869,285
Number of Sequences: 5004
Number of extensions: 88585
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 888013952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)