Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B09_e642_03.seq
         (1576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    30   3.9  
Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical pr...    29   6.8  
Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical pr...    29   6.8  
AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.     29   6.8  

>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +2

Query: 422 EKIPITVITVCKLKHKYDYIDPCTRKSFLYR-------RRSSK*QVTVSNYTAASVPNGF 580
           E++ +  + V     KYD+  P T  SFLY        R+  K     S YT   +PNGF
Sbjct: 236 EQVVMMYVLVGSEDEKYDFF-PKTTGSFLYYGEMFVNVRKVEKMDEERSRYTIEVLPNGF 294

Query: 581 NTIHYI*VILYTGF 622
           +    + V ++TG+
Sbjct: 295 SNSVMMNVYVHTGW 308


>Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical
           protein F55B12.3b protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 285 NINKLCPSIQKHFRKNCMKCTYITFCKKKLHLDTGFRIIK 166
           NI +L   I+ HF+++ + C  +    K LH  TG+ ++K
Sbjct: 105 NIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYDLLK 144


>Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical
           protein F55B12.3a protein.
          Length = 587

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 285 NINKLCPSIQKHFRKNCMKCTYITFCKKKLHLDTGFRIIK 166
           NI +L   I+ HF+++ + C  +    K LH  TG+ ++K
Sbjct: 107 NIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYDLLK 146


>AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.
          Length = 587

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 285 NINKLCPSIQKHFRKNCMKCTYITFCKKKLHLDTGFRIIK 166
           NI +L   I+ HF+++ + C  +    K LH  TG+ ++K
Sbjct: 107 NIRQLRAIIEPHFQRDFLSCLPVELGMKILHNLTGYDLLK 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,322,196
Number of Sequences: 27780
Number of extensions: 563025
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4556336222
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)