Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B07_e626_03.seq
         (1546 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1G0N2 Cluster: Bmp-2; n=1; Bombyx mori|Rep: Bmp-2 - Bo...    46   0.002
UniRef50_Q67WR4 Cluster: Putative uncharacterized protein OSJNBa...    37   1.6  
UniRef50_Q6PI78 Cluster: Transmembrane protein 65; n=18; Eukaryo...    36   2.2  
UniRef50_UPI0000E1F94C Cluster: PREDICTED: hypothetical protein;...    34   8.7  
UniRef50_Q629M4 Cluster: Putative uncharacterized protein; n=10;...    34   8.7  
UniRef50_A3PUM7 Cluster: Pyrrolo-quinoline quinone; n=1; Mycobac...    34   8.7  

>UniRef50_Q1G0N2 Cluster: Bmp-2; n=1; Bombyx mori|Rep: Bmp-2 -
           Bombyx mori (Silk moth)
          Length = 297

 Score = 46.4 bits (105), Expect = 0.002
 Identities = 29/62 (46%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +2

Query: 77  NGDMYSRRSPM-----RGG-APVAGAYDRDPYAQQYQ--PMXXXXXXXXXXXXXXXMVPR 232
           NGDMYSRRSP      RGG APVAG Y+RD Y  QY   P+               + PR
Sbjct: 210 NGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQYMQPPLGRGGGAPRGRDMSGGVGPR 269

Query: 233 RY 238
           RY
Sbjct: 270 RY 271


>UniRef50_Q67WR4 Cluster: Putative uncharacterized protein
           OSJNBa0085J13.5; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0085J13.5 - Oryza sativa subsp. japonica (Rice)
          Length = 292

 Score = 36.7 bits (81), Expect = 1.6
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -2

Query: 234 LRGTIPP-ASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLPRAEXP 58
           LRG++   A++ PR APPPRP    C +  +    P  G  P      L + P  R   P
Sbjct: 169 LRGSLTTKAAASPRDAPPPRPASRRCASRPTRRALPPRGRQPPPRRPGLRVPPPSRRLPP 228

Query: 57  AARGIH*XLERPPPR 13
            A       + PPPR
Sbjct: 229 QAAAS--PRDAPPPR 241


>UniRef50_Q6PI78 Cluster: Transmembrane protein 65; n=18;
           Eukaryota|Rep: Transmembrane protein 65 - Homo sapiens
           (Human)
          Length = 240

 Score = 36.3 bits (80), Expect = 2.2
 Identities = 19/41 (46%), Positives = 20/41 (48%)
 Frame = -2

Query: 201 PRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISP 79
           P  A  PRP  W CC  G L+ AP  G P   G RRL   P
Sbjct: 20  PAAAAAPRPPSWCCCGRGLLALAPPGGLPG--GPRRLGTHP 58


>UniRef50_UPI0000E1F94C Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 148

 Score = 34.3 bits (75), Expect = 8.7
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 222 IPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAP-PRMGERRLYISPLPRAEXPAARG 46
           +P  +SL R A  PRP G   C++ +   AP   AP PR       + PL  A  P A G
Sbjct: 36  LPTTASLLRSALRPRPFGQAACSHCT---APGPRAPGPRFQPSCPALRPLGPAPGPRAPG 92

Query: 45  IH*XLERPPPR 13
           +      P PR
Sbjct: 93  LRFRPSCPAPR 103


>UniRef50_Q629M4 Cluster: Putative uncharacterized protein; n=10;
           Burkholderia|Rep: Putative uncharacterized protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 103

 Score = 34.3 bits (75), Expect = 8.7
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -3

Query: 257 RVRSCASTSAGPSLRRVLYRAALRPRVP*AGTVARTDLCRKLPLQVLRRAWVSVG--CTY 84
           R+R    T  G  +    +RAA+ PR+   GT  R      +P+QVL  AW +VG   T 
Sbjct: 34  RMRRMTITGCGVRIAATAHRAAIAPRMQPPGTRMR------VPIQVLAGAWTAVGRPATN 87

Query: 83  HRCLVP 66
            R L P
Sbjct: 88  GRALRP 93


>UniRef50_A3PUM7 Cluster: Pyrrolo-quinoline quinone; n=1;
           Mycobacterium sp. JLS|Rep: Pyrrolo-quinoline quinone -
           Mycobacterium sp. (strain JLS)
          Length = 818

 Score = 34.3 bits (75), Expect = 8.7
 Identities = 23/60 (38%), Positives = 24/60 (40%)
 Frame = -2

Query: 231 RGTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLPRAEXPAA 52
           RG  PPA   P  A PP P GW   A G     PA   PPR  E +    P  R     A
Sbjct: 13  RGWDPPADWTPDPAWPPAPAGWQFWADG-----PAPALPPRTVEPQRQSKPTRRRSKAVA 67


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,030,752,092
Number of Sequences: 1657284
Number of extensions: 18053502
Number of successful extensions: 42591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42351
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 165344584750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)