Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B07_e626_03.seq
         (1546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       32   1.4  
05_04_0146 + 18393447-18394043                                         29   7.5  
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083...    29   9.9  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 231 RGTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPL-PRAEXPA 55
           RG  PPAS  P   PPPRP   Y       +   +  +PPR  + R+   PL PR    +
Sbjct: 167 RGRKPPASRRPPQPPPPRP---YRAERRQDAHESSAPSPPRSRKNRIDQEPLIPRGSLDS 223

Query: 54  A 52
           A
Sbjct: 224 A 224


>05_04_0146 + 18393447-18394043
          Length = 198

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 216 PASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLPRAEXPAA 52
           P +SLP  A PP P      A  + S +P     P  G  +  ++P   A   AA
Sbjct: 78  PPASLPPSASPPPPEREAAAAMAAASASPPWAPSPARGRTKAAVAPAAAAAVVAA 132


>03_05_0850 +
           28206166-28206767,28207648-28207891,28208076-28208389,
           28209013-28209067
          Length = 404

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 225 TIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLP 73
           ++PP+SS PR +P   P+         +   P  G    +GE    + P+P
Sbjct: 11  SLPPSSSSPRISPHSTPVSLTSATPSGVHRPPGCGRLDTVGEGSELLDPIP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,607,317
Number of Sequences: 37544
Number of extensions: 559806
Number of successful extensions: 1626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)