Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_B07_e626_03.seq
(1546 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.003
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.005
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 40 0.007
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.009
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.022
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 37 0.038
SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.46
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6) 33 0.46
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 33 0.61
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_9986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_11515| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_56167| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.8) 31 3.3
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 30 4.3
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.3
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5) 30 4.3
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 30 4.3
SB_46414| Best HMM Match : Extensin_2 (HMM E-Value=0.31) 30 5.7
SB_45434| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.7
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.7
SB_49619| Best HMM Match : C4dic_mal_tran (HMM E-Value=2) 29 7.5
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 10.0
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 40.7 bits (91), Expect = 0.003
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = -1
Query: 1045 GKGNGSGLXXXXPXWRKGEXXXXX*SLVTARVFPXXDVVNDGPXNCXTTHXKA 887
G+ G+GL P KG+ L + FP DVV P NC TTH +A
Sbjct: 48 GRAIGAGLFAITPAGEKGDVLQGDLKLGKRQGFPSHDVVKRRPVNCNTTHYRA 100
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 39.9 bits (89), Expect = 0.005
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -1
Query: 1054 AXFGKGNGSGLXXXXPXWRKGEXXXXX*SLVTARVFPXXDVVNDGPXNCXTTHXKA 887
A GKG+ GL P +G L A+ FP DVV P NC TTH +A
Sbjct: 3 ATVGKGDRCGLFAITPAGERGMCCKAI-KLGNAKGFPSHDVVKRRPVNCNTTHYRA 57
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 39.5 bits (88), Expect = 0.007
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = -1
Query: 1045 GKGNGSGLXXXXPXWRKGEXXXXX*SLVTARVFPXXDVVNDGPXNCXTTHXKA 887
G+ G+GL P +G L A VFP DVV P NC TTH +A
Sbjct: 8 GRAIGAGLFAITPAGERGMCCKSI-KLAHASVFPSHDVVKRRPVNCNTTHYRA 59
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 39.1 bits (87), Expect = 0.009
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = -1
Query: 1045 GKGNGSGLXXXXPXWRKGEXXXXX*SLVTARVFPXXDVVNDGPXNCXTTHXKA 887
G+ G+GL P +G L A VFP DVV P NC TTH +A
Sbjct: 14 GRAIGAGLFAITPAGERGMCCKAI-KLGNASVFPSHDVVKRRPVNCNTTHYRA 65
>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 37.9 bits (84), Expect = 0.022
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = -1
Query: 1045 GKGNGSGLXXXXPXWRKGEXXXXX*SLVTARVFPXXDVVNDGPXNCXTTHXKA 887
G+ G+GL P +G LVT VFP DVV P NC TTH +A
Sbjct: 1847 GRAIGAGLFAITPAGERGMCCKAI-KLVTP-VFPSHDVVKRRPVNCNTTHYRA 1897
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 37.1 bits (82), Expect = 0.038
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -1
Query: 1033 GSGLXXXXPXWRKGEXXXXX*SLVTARVFPXXDVVNDGPXNCXTTHXKA 887
G+GL P +G L A VFP DVV P NC TTH +A
Sbjct: 4 GAGLFAITPAGERGMCCKAI-KLGNASVFPSHDVVKRRPVNCNTTHYRA 51
>SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 33.5 bits (73), Expect = 0.46
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -2
Query: 60 PAARGIH*XLERPPPR 13
PAARGIH LERPPPR
Sbjct: 14 PAARGIHYVLERPPPR 29
>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 237
Score = 33.5 bits (73), Expect = 0.46
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -1
Query: 1045 GKGNGSGLXXXXPXWRKGEXXXXX*SLVTARVFPXXDVVNDGPXNCXTTHXKA 887
G+ G+GL P +G L AR FP D P NC TTH +A
Sbjct: 45 GRSIGAGLFAITPAGERGMCCKAI-KLGNARGFPSHDGEKRRPVNCNTTHYRA 96
>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 765
Score = 33.1 bits (72), Expect = 0.61
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 539 FSARVLGILNVHSTRIAFTKRPQHAYCVH*TSTARILRTLNVHSARIVY 393
F+ +VL +L +HS I PQ Y ST ++L L +HS I +
Sbjct: 229 FTVQVLPLLEIHSPGITPLGNPQSRYFPSWKSTVQVLPLLEIHSPGITH 277
>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 32.3 bits (70), Expect = 1.1
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 958 ARVFPXXDVVNDGPXNCXTTHXKA 887
A VFP DVV P NC TTH +A
Sbjct: 34 AIVFPSHDVVKRRPVNCNTTHYRA 57
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 31.5 bits (68), Expect = 1.9
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = -1
Query: 472 STRIAYTKRPRHAYCVH*TSTARVSCTARTGTARSVRVLRTKCLLQNI*LSGNAIDVFCS 293
STR RH YC T +R+SC T R LRT + S +A + +
Sbjct: 227 STRYYIVPSSRHGYCPESTKASRMSCGNSTNAQR--EELRTDEFFHELQFSVSAFSMHTT 284
Query: 292 VSRCVLN*VNVDESVVALV 236
+R + ++ D +V V
Sbjct: 285 GNRSSYSPIDFDSNVKTTV 303
>SB_9986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 31.5 bits (68), Expect = 1.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 1072 HXPXRLAXFGKGNGSGLXXXXPXWRKGE 989
H P RL GKG+ GL WRKG+
Sbjct: 4 HSPFRLRNCGKGDRCGLLRYYASWRKGD 31
>SB_11515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 31.1 bits (67), Expect = 2.5
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 899 SRXTIXWAVVYNVXXWENP 955
SR TI W YNV WENP
Sbjct: 2 SRITIHWPSFYNVVHWENP 20
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 31.1 bits (67), Expect = 2.5
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +2
Query: 11 PRGGGRSXN*WIPRAAGNSARGNGDMYSRR---SPM---RGGAPVAGAYDRDPYAQQ 163
P+ G RS + +PR G S G+GD YSR SP+ G PV DP QQ
Sbjct: 3683 PQSGRRSRS--LPRHRGRSLEGHGDEYSRHYSCSPILNAMGNCPVHQHAAGDPSQQQ 3737
>SB_56167| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.8)
Length = 285
Score = 30.7 bits (66), Expect = 3.3
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -2
Query: 501 HAYCVH*TSTARVLRTLNVHGTHIAYTKRPQRAYRVQRVQEPPAACAYCVRNVSYKIFDC 322
+ Y H S L VHGT I +RA R+Q A A C++N +YK C
Sbjct: 75 YKYMAHLYSAEHPEYNLQVHGTLIQ-----RRASRIQPTNTWHAYPAQCIQNTTYKYMTC 129
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 30.3 bits (65), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 949 FPXXDVVNDGPXNCXTTHXKA 887
FP DVV P NC TTH +A
Sbjct: 2 FPSHDVVKRRPVNCNTTHYRA 22
>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 30.3 bits (65), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 949 FPXXDVVNDGPXNCXTTHXKA 887
FP DVV P NC TTH +A
Sbjct: 58 FPSHDVVKRRPVNCNTTHYRA 78
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 30.3 bits (65), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 949 FPXXDVVNDGPXNCXTTHXKA 887
FP DVV P NC TTH +A
Sbjct: 626 FPSHDVVKRRPVNCNTTHYRA 646
>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +2
Query: 896 VSRXTIXWAVVYNVXXWENPCGYQTLXXXXXFPFSPXGVXTXKAR 1030
VSR TI W YNV + L P SP GV +AR
Sbjct: 37 VSRITIHWTSFYNVVTGKT-LALPNLIALQHIPLSPAGVIAEEAR 80
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 30.3 bits (65), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 949 FPXXDVVNDGPXNCXTTHXKA 887
FP DVV P NC TTH +A
Sbjct: 58 FPSHDVVKRRPVNCNTTHYRA 78
>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
Length = 281
Score = 30.3 bits (65), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 949 FPXXDVVNDGPXNCXTTHXKA 887
FP DVV P NC TTH +A
Sbjct: 69 FPSHDVVKRRPVNCNTTHYRA 89
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 30.3 bits (65), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 949 FPXXDVVNDGPXNCXTTHXKA 887
FP DVV P NC TTH +A
Sbjct: 69 FPSHDVVKRRPVNCNTTHYRA 89
>SB_46414| Best HMM Match : Extensin_2 (HMM E-Value=0.31)
Length = 469
Score = 29.9 bits (64), Expect = 5.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 536 SARVLGILNVHSTRIAFTKRPQHAYCVH*TSTARILRTLNVHSARI 399
+ +VL +L +HS I PQ Y ST ++L L +HS I
Sbjct: 122 TVQVLPLLEIHSPGITPLGNPQSRYYPSWKSTVQVLPILEIHSPGI 167
>SB_45434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = -1
Query: 88 HITVASCRIX--CSPGDPLV 35
H+T+ S RI CSPGDPLV
Sbjct: 24 HVTICSYRISNSCSPGDPLV 43
>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 29.9 bits (64), Expect = 5.7
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 967 LVTARVFPXXDVVNDGPXNCXTTHXKA 887
L A VF DVV P NC TTH +A
Sbjct: 13 LGNASVFRSHDVVKRRPVNCNTTHYRA 39
>SB_49619| Best HMM Match : C4dic_mal_tran (HMM E-Value=2)
Length = 630
Score = 29.5 bits (63), Expect = 7.5
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 350 RTQYAHAAGGSCTRCTRYARCGRLVYAICVPWTFSVRNTRAVDV**TQYACCGRLVYPTR 529
R Q AH SCTRC ++ ++VY + + + V+ R + T+ ++VY R
Sbjct: 217 RVQGAHLIQRSCTRCASHS---KVVYKVRLSYKGRVQGARLIQRSCTRCVSHTKVVYKVR 273
Query: 530 V 532
V
Sbjct: 274 V 274
>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.1 bits (62), Expect = 10.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 220 DGPAEVLAQLRTRQHLPSLKHNVTPNKTHQ 309
+GP E+L + R +LPS+ N+ P K Q
Sbjct: 1206 NGPHEILMGRKLRNNLPSVPENLKPRKIDQ 1235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,114,493
Number of Sequences: 59808
Number of extensions: 626788
Number of successful extensions: 2570
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2541
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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