Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B07_e626_03.seq
         (1546 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   5.9  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    25   7.7  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 21/72 (29%), Positives = 28/72 (38%)
 Frame = -2

Query: 219 PPASSLPRGAPPPRPIGWYCCAYGSLS*APATGAPPRMGERRLYISPLPRAEXPAARGIH 40
           PP +  P    PPRP G Y    G     P    P         + P  +   P+A+G  
Sbjct: 200 PPRTGTPTQPQPPRPGGMYPQPPG----VPMPMRPQMPPGAVPGMQPGMQPRPPSAQG-- 253

Query: 39  *XLERPPPRGXP 4
             ++RPP  G P
Sbjct: 254 --MQRPPMMGQP 263


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 528 RVGYTKRPQHAYCVH*TSTARVLRTLNVHGTHIAYTKRPQRAYRVQRVQEPPAA 367
           +VG T     AYC       R+L+ L +   +   T      Y V+ V E PAA
Sbjct: 89  KVGLTNYAA-AYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAA 141


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,125,872
Number of Sequences: 2352
Number of extensions: 20093
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 181658565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)