Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B07_e626_03.seq
         (1546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    29   8.8  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    29   8.8  

>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 228 GTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATG-APPRMG 103
           G I P S  P G P P P   +      ++  PA G  PP+MG
Sbjct: 176 GQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMG 218


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 228 GTIPPASSLPRGAPPPRPIGWYCCAYGSLS*APATG-APPRMG 103
           G I P S  P G P P P   +      ++  PA G  PP+MG
Sbjct: 173 GQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMG 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,112,257
Number of Sequences: 27780
Number of extensions: 442932
Number of successful extensions: 1019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4452547242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)