Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B07_e626_03.seq
         (1546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   7.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 153 TRNSTSLWDAGAERRAVENSPEG 221
           T++  SL DA   RRA+EN  +G
Sbjct: 458 TKSLASLTDAENSRRAMENLGDG 480


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +1

Query: 349 SYAIRARCGRFLYALYTIRALWTFSV-RNMRAVDV*CTQYACCGRLVNAIRVLWTFSIP 522
           SYA+   C  FL     I   W F V R    +      Y CC       ++ WT + P
Sbjct: 447 SYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCW-----WKICWTITTP 500


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +1

Query: 349 SYAIRARCGRFLYALYTIRALWTFSV-RNMRAVDV*CTQYACCGRLVNAIRVLWTFSIP 522
           SYA+   C  FL     I   W F V R    +      Y CC       ++ WT + P
Sbjct: 500 SYAVSGFCLLFLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCW-----WKICWTITTP 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,664
Number of Sequences: 438
Number of extensions: 6092
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54190125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)