Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B06_e618_04.seq
         (1545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.0  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   6.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +2

Query: 1346 PXPRPFSXAPXXXNXPAGXXXXXGXXNPPXPGXGXPXGVXXXXXPPLXXXXXXXGP 1513
            P P P   AP     P          NPP P    P G      PPL        P
Sbjct: 361  PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP-GRSAPALPPLGNASRTSTP 415


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 506 NKKIKNMCIIQSYVLPDGKNVL 571
           ++ +  +C+ QSY+  DGKN L
Sbjct: 409 SRDVNRICMFQSYISQDGKNQL 430


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 245 NILTLFSKLRNRNELIVKAGSFIPLTNSNHL 153
           N   LFSK+ N N+  +  G  +P   ++HL
Sbjct: 303 NFYQLFSKIDNENKGYIVGGEAVPFFMASHL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,211,699
Number of Sequences: 5004
Number of extensions: 64372
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)