Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B05_e610_03.seq
         (1582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    31   3.3  
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138...    30   4.4  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.4  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    30   5.8  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    30   5.8  

>12_02_0118 - 13869237-13869307,13869375-13869465,13870321-13870440,
            13870668-13870795,13871159-13871270,13871719-13871817,
            13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = +2

Query: 890  PLPXNHPPXKVFWGXXG--XNX*FGTLREPPIXXLPGKAPNXAQKGRKKTXRAGPXXPA 1060
            P P   PP     G         F   + PP    PG AP  A  G  +T   GP  P+
Sbjct: 175  PPPFGRPPSAAAAGQSAPLGGALFAAAQPPPFGGPPGAAPQPAPTGGLRTPYGGPPAPS 233


>11_01_0172 -
           1383568-1384440,1385336-1385401,1385470-1385505,
           1385604-1385743,1386978-1387134,1387245-1387418,
           1387540-1387790,1390296-1390446
          Length = 615

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
 Frame = -2

Query: 213 SSVADSQLPAVAAGGGRVSRDVDTRPPLHAST-------PL-I*DLGAPPXFXLVPNXLQ 58
           SS+  S     A   G  S D+   PP   S        P+ + D+GAPP F  VP    
Sbjct: 423 SSIFSSLAAEQARNSGSTSGDLSAGPPGFESNKKPRLDNPIHVSDMGAPPFFGQVPQVQP 482

Query: 57  QXGXXTSX*GGRQ 19
           Q G  T+  GG Q
Sbjct: 483 QIG-ATAALGGTQ 494


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 498 ITIHWPSFYNVV-TGKTLALPNLIALQH 578
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 560 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLK 694
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLK 443


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 560 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLK 694
           L+R +   PF SW N  +A  D+ +  L  LNG    +   + LK
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLK 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,260,624
Number of Sequences: 37544
Number of extensions: 635832
Number of successful extensions: 1828
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5116529628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)