Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B05_e610_03.seq
         (1582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33750.1 68414.m04172 terpene synthase/cyclase family protein...    31   1.6  
At5g24590.2 68418.m02905 turnip crinkle virus-interacting protei...    30   3.7  
At1g49840.1 68414.m05588 expressed protein contains Pfam profile...    29   6.4  
At5g28520.1 68418.m03472 jacalin lectin family protein similar t...    29   8.4  

>At1g33750.1 68414.m04172 terpene synthase/cyclase family protein
           similar to DELTA-CADINENE SYNTHASE ISOZYME A GB:Q43714
           from [Gossypium arboreum]
          Length = 603

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -3

Query: 296 TMTRIHISVSLPLKISHLHAHIETLARTHR*LTRSSPRSLQAVAACRETSTHARRSTLPH 117
           T+  +     LPLK + L      L + H  L+R S +    V AC +TS       LPH
Sbjct: 12  TLPHLGNGTRLPLK-TKLSLFPMHLLQNHTTLSRRSTKLNLCVKACSKTSGVESSRPLPH 70

Query: 116 PLSKIWG 96
               +WG
Sbjct: 71  SAPDLWG 77


>At5g24590.2 68418.m02905 turnip crinkle virus-interacting protein /
           TCV-interacting protein (TIP) contains Pfam PF02365: No
           apical meristem (NAM) domain; similar to NAC2
           (GI:6456751) {Arabidopsis thaliana}; identical to cDNA
           TIP mRNA,  GI:9408600
          Length = 451

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 58  LQXIRHEGKXWRRPQILDKGCGSVER---RACVDVSRHAATACSDRGELRVSYR*VLASV 228
           LQ I+ E K     + + KGCG+  R   R      + AA  CS RG  RV    V+  +
Sbjct: 386 LQFIKKEVKD-TTTETMTKGCGNFTRSKSRTSFIFKKIAAMGCSYRGLFRVGVVAVVCVM 444

Query: 229 SMCA 240
           S+C+
Sbjct: 445 SVCS 448


>At1g49840.1 68414.m05588 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 494

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 158 RETSTHARRSTLPHPLSKIWGRRHXXPSCRIXCSXGG 48
           R  S    RST PH  + +WGR+    S    CS GG
Sbjct: 27  RSRSASPSRSTTPHMKALLWGRKKLIASS--GCSGGG 61


>At5g28520.1 68418.m03472 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 451

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 611 EARTDRPSQQLRSLNGEWQIVSVNIL-LKFRVKFLLXQLIFXPIGXKSAXSXINXKE 778
           E + D PS+ + ++ G W   S N   +  R++F   +  F P+G +S  S    KE
Sbjct: 366 EFKLDYPSEYITTVEGFWDKTSGNERGVITRLRFTTNKQTFRPVGLESTTSFSLGKE 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,413,997
Number of Sequences: 28952
Number of extensions: 428114
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4260257664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)