Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B04_e602_04.seq
         (1491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.41 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 24/76 (31%), Positives = 27/76 (35%)
 Frame = +1

Query: 1141 RXPPAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPPQG 1320
            R PP PPP  R    PP+G   +      N      PP      R N     + P PPQG
Sbjct: 310  RPPPPPPPSRRNRGKPPIGNGSS------NSSLPPPPP----PPRSN--AAGSIPLPPQG 357

Query: 1321 XXRXXXPPXRGXXPPG 1368
                  PP R     G
Sbjct: 358  RSAPPPPPPRSAPSTG 373


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/57 (28%), Positives = 18/57 (31%)
 Frame = +2

Query: 1040 PXL*XXXKXXXXXXRPKXPXXXXXQNNWXXAPXXGXPRPPPPXXDPXXAPPWAXQXP 1210
            P L    K       P  P     Q+     P    PRP  P   P  APP   + P
Sbjct: 110  PKLRHIGKSSASAAPPSAPAPPTPQSE-LRPPTSAPPRPSIPPPSPASAPPIPSKAP 165


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 1132 PGXRXPPAPPPXXRPXPXPP 1191
            PG   PP PPP   P   PP
Sbjct: 6    PGNPPPPPPPPGFEPPSQPP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,650
Number of Sequences: 5004
Number of extensions: 43132
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 832513080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)