Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_B04_e602_04.seq
(1491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.77
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.8
11_06_0610 - 25449085-25453284 31 2.3
07_03_1788 + 29523216-29524867,29525048-29525075 31 2.3
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 31 2.3
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 31 2.3
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375... 31 3.1
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 31 3.1
07_01_0516 - 3850252-3852870 30 4.1
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 30 5.4
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 30 5.4
08_01_0134 + 1067826-1068158 30 5.4
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 30 5.4
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 30 5.4
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 29 7.1
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 29 9.4
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 29 9.4
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 29 9.4
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.7 bits (71), Expect = 0.77
Identities = 28/97 (28%), Positives = 29/97 (29%)
Frame = +1
Query: 1135 GXRXPPAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPP 1314
G PP PPP P PP G+ PP R PG P PP
Sbjct: 317 GTGAPP-PPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRP-PGPGPGPPPPP 374
Query: 1315 QGXXRXXXPPXRGXXPPGXRERXQKXRXGXPPXXXXP 1425
R P P G R R G PP P
Sbjct: 375 GAAGRGGGGPPPPALPGGPRAR------GPPPFKKSP 405
Score = 30.3 bits (65), Expect = 4.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 1143 GXPGPPPXXKTLXXPPPGPGXGP 1211
G P PPP PPGPG GP
Sbjct: 348 GPPPPPPPAAPAAPRPPGPGPGP 370
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +1
Query: 1243 HAPPL*GGXXRQNPGXXXTXPXPPQGXXRXXXPPXRGXXPP 1365
H PP GG Q P P PPQ PP +G PP
Sbjct: 10 HPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPP 50
Score = 29.1 bits (62), Expect = 9.4
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 1075 PXAPQTPXGXXXSK*LXXXPGXRXPPAPPPXXRPXPXPP 1191
P P P G S+ P PP+PPP P P PP
Sbjct: 92 PPPPPPPYGVNSSQ---PPPPPPPPPSPPPSAPPPPPPP 127
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.1 bits (67), Expect = 2.3
Identities = 28/121 (23%), Positives = 31/121 (25%), Gaps = 5/121 (4%)
Frame = +1
Query: 1084 PQTPXGXXXSK*LXXXPGXRXPPAP-PPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL* 1260
P TP G S P + PP P P P P G + K P
Sbjct: 663 PPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPES 722
Query: 1261 GGXXRQNPGXXXTXPXPPQGX----XRXXXPPXRGXXPPGXRERXQKXRXGXPPXXXXPQ 1428
P P PP+ PP PP E PP P
Sbjct: 723 EASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEEYTPSPPKSSPPEEKSPP 782
Query: 1429 P 1431
P
Sbjct: 783 P 783
>07_03_1788 + 29523216-29524867,29525048-29525075
Length = 559
Score = 31.1 bits (67), Expect = 2.3
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 1132 PGXRXPPAPPPXXRPXPXPPLGXAXAXXLXXG 1227
P PP PPP P P PP G G
Sbjct: 26 PRKNPPPPPPPATDPNPHPPSGAGAGAGAGAG 57
>07_03_1573 + 27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 31.1 bits (67), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 1149 PGPPPXXKTLXXPPPGPGXGP 1211
P PPP +T PPPG G GP
Sbjct: 37 PPPPPRRRTPPPPPPGSGPGP 57
>05_07_0066 + 27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 31.1 bits (67), Expect = 2.3
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 1081 APQTPXGXXXSK*LXXXPGXRXPPAPPPXXRPXPXPPLGXAXA 1209
A +P S L P R PP PPP P P PP + A
Sbjct: 100 ARTSPYLAAASASLESKPRTRAPPPPPPA--PAPAPPSSSSAA 140
>10_07_0107 - 12936839-12937030,12937305-12937386,12937476-12937586,
12937667-12937918,12938004-12940237,12940328-12940525
Length = 1022
Score = 30.7 bits (66), Expect = 3.1
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 1081 APQTPXGXXXSK*LXXXPGXRXPPAPP-PXXRPXPXPPLGXAXAXXLXXGNXXKXHAPP 1254
AP +P + L P R PP P P P PPL + K HAPP
Sbjct: 569 APPSPPEPPSPRHLPSPPPLRSPPRQPTPPPSPSQQPPLPTPQPVQASPTSPTKQHAPP 627
>05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 30.7 bits (66), Expect = 3.1
Identities = 23/96 (23%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Frame = +1
Query: 1084 PQTPXGXXXSK*LXXXPGXRXPPAPPPXXRPXP--XPPLGXAXAXXLXXGNXXKXHAPPL 1257
P P S P P +PPP P P PPL + +PP
Sbjct: 35 PLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPK 94
Query: 1258 *GGXXRQNP-GXXXTXPXPPQGXXRXXXPPXRGXXP 1362
Q+P T PP PP P
Sbjct: 95 PPSQAAQSPLPPTTTTTTPPTAPVPAAAPPPTAPSP 130
>07_01_0516 - 3850252-3852870
Length = 872
Score = 30.3 bits (65), Expect = 4.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 1132 PGXRXPPAPPPXXRPXPXPP 1191
P PP PPP RP P PP
Sbjct: 11 PPRLLPPQPPPTSRPLPPPP 30
>12_02_0778 + 23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 29.9 bits (64), Expect = 5.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 1197 AQGGAWXGSXXGGGGRGXPXXGA 1129
++GGAW GGG RG P A
Sbjct: 114 SRGGAWGAQDRGGGARGGPFSAA 136
>12_02_0118 - 13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 29.9 bits (64), Expect = 5.4
Identities = 28/99 (28%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Frame = +1
Query: 1141 RXPPAPPPXXRPXP-XPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPPQ 1317
R P APPP RP P PP PP GG PG P P
Sbjct: 57 RAPQAPPPGARPFPGSPPPPSQPPPPFARPAAPVQQQPPPFGG----PPG---VMPSQPL 109
Query: 1318 GXXRXXXPPXRGXXPPGX-RERXQKXRXGXPPXXXXPQP 1431
+ P G P G + Q+ G PP P
Sbjct: 110 QQQQQQQRPAFGGPPSGAPPAQAQRTPFGGPPSAMSQGP 148
>08_01_0134 + 1067826-1068158
Length = 110
Score = 29.9 bits (64), Expect = 5.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 1132 PGXRXPPAPPPXXRPXPXPP 1191
P R PP PPP RP P PP
Sbjct: 6 PSSR-PPPPPPLPRPHPAPP 24
>02_05_0405 + 28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 29.9 bits (64), Expect = 5.4
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 1132 PGXRXPPAPPPXXRPXPXPPLGXAXA 1209
PG PP PPP +P P P A A
Sbjct: 38 PGFSAPPTPPPAAQPPPPTPPAPAPA 63
>02_04_0056 + 19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 29.9 bits (64), Expect = 5.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 1147 PPAPPPXXRPXPXPPLG 1197
PP PPP P P PP G
Sbjct: 53 PPPPPPSPSPSPSPPAG 69
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 1132 PGXRXPPAPPPXXRPXPXPPLGXAXAXXLXXG 1227
PG R PPAP P P P G A + G
Sbjct: 75 PGRRSPPAPAPANPPSSDPMPGGAPSAAPAAG 106
>04_03_0660 + 18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.1 bits (62), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 1141 RXPPAPPPXXRPXPXPP 1191
R PP PPP +P P PP
Sbjct: 51 RPPPPPPPPTQPAPPPP 67
>03_02_1033 + 13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 29.1 bits (62), Expect = 9.4
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +1
Query: 1084 PQTPXGXXXSK*LXXXPGXRXPPAPPPXXRPXPXPPLGXAXAXXLXXG 1227
PQ P G L P PAPPP P P P A A G
Sbjct: 6 PQAPAGTPPMAPLPVPPPIAPIPAPPPRA-PAPAPAAAAAVASTSAAG 52
>03_02_1031 + 13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 29.1 bits (62), Expect = 9.4
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +1
Query: 1084 PQTPXGXXXSK*LXXXPGXRXPPAPPPXXRPXPXPPLGXAXAXXLXXG 1227
PQ P G L P PAPPP P P P A A G
Sbjct: 6 PQAPAGTPPMAPLPVPPPIAPIPAPPPRA-PAPAPAAAAAVASTSAAG 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,430,177
Number of Sequences: 37544
Number of extensions: 429997
Number of successful extensions: 4254
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3498
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4768466388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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