Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_B04_e602_04.seq
(1491 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.007
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 32 1.0
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 32 1.4
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 31 1.8
SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027) 30 4.1
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 30 4.1
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 9.6
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 9.6
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 39.5 bits (88), Expect = 0.007
Identities = 29/95 (30%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Frame = +1
Query: 1087 QTPXGXXXSK*LXXXPGXRXPPAPPP--XXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL* 1260
QTP G PG PP PPP P P PP G + PP
Sbjct: 902 QTPGGSESPS--ASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPP 959
Query: 1261 GGXXRQNPGXXXTXPXPPQGXXRXXXPPXRGXXPP 1365
GG G P PP G PP PP
Sbjct: 960 GGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPP 994
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 32.3 bits (70), Expect = 1.0
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = +1
Query: 1075 PXAPQTPXGXXXSK*LXXXPGXRXPPAPPP----XXRPXPXPPLGXA 1203
P AP+TP P R PP PPP P P PP+ A
Sbjct: 114 PRAPETPSQAPSPPPPPTSPATRAPPPPPPIAPATGGPPPPPPIAPA 160
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 31.9 bits (69), Expect = 1.4
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Frame = +1
Query: 1132 PGXRXPPAP--PPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXP 1305
PG PP PP +P P P G A L A P GG Q P P
Sbjct: 793 PGYGAPPTQGGPPQAQPPPHAPPGQAHYQQLGA-------AAPNQGGYHPQQP------P 839
Query: 1306 XPPQGXX-----RXXXPPXRGXXPPGXRERXQKXRXGXPP 1410
PPQG + PP PP +++ ++ + G PP
Sbjct: 840 PPPQGYEPQPQYQPQGPPQYYGGPPPQQQQQRQPQSGPPP 879
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = -2
Query: 1439 PFSGWGXXXXGGXPXLXFXXLSRXPGGXXPRXGGXXXLXXPWGGXG 1302
P GWG GG + + R PGG R G P GG G
Sbjct: 36 PGGGWGRGSGGGWGRMQGGGMGRGPGGGWGRMQGGGMGRGPGGGLG 81
>SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027)
Length = 345
Score = 30.3 bits (65), Expect = 4.1
Identities = 23/77 (29%), Positives = 24/77 (31%)
Frame = +1
Query: 1135 GXRXPPAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPP 1314
G P PP P PPLG G + PPL G P P PP
Sbjct: 183 GGNLYPHPPLGGNLYPYPPLGGNLYPYPLLGGSLYPY-PPLGGNLYPYPPLGGNLYPYPP 241
Query: 1315 QGXXRXXXPPXRGXXPP 1365
G PP G P
Sbjct: 242 LGGNLYPYPPLGGNLYP 258
Score = 29.1 bits (62), Expect = 9.6
Identities = 22/72 (30%), Positives = 23/72 (31%)
Frame = +1
Query: 1150 PAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPPQGXXR 1329
P PP P PPLG G + PPL G P P PP G
Sbjct: 218 PYPPLGGNLYPYPPLGGNLYPYPPLGGNLYPY-PPLGGNLYPYLPLGGSLYPYPPLGGNL 276
Query: 1330 XXXPPXRGXXPP 1365
PP G P
Sbjct: 277 YPYPPLGGNLYP 288
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.3 bits (65), Expect = 4.1
Identities = 25/80 (31%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Frame = +1
Query: 1132 PGXRXPPAPPPXXRPXPXPP-LGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPX 1308
P R PPP R P PP +G A G PP G P P
Sbjct: 330 PPSRSSQRPPPPSRGAPPPPSMGMAPP---PVGGAAPPPPPPPPVGGPPPPPPPIEGRPP 386
Query: 1309 PPQGXXRXXXPPXRGXXPPG 1368
G PP RG PPG
Sbjct: 387 SSLGNPPPPPPPGRGAPPPG 406
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/71 (28%), Positives = 22/71 (30%)
Frame = +1
Query: 1153 APPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPPQGXXRX 1332
APPP R P PP A PP ++ P P PP
Sbjct: 296 APPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPP--SMGM 353
Query: 1333 XXPPXRGXXPP 1365
PP G PP
Sbjct: 354 APPPVGGAAPP 364
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 7.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 1132 PGXRXPPAPPPXXRPXPXPP 1191
P PP PPP +P P PP
Sbjct: 360 PTNNTPPPPPPTNKPPPPPP 379
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.1 bits (62), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 1131 PRXXGXPGPPPXXKTLXXPPPGPGXGP 1211
P PPP ++ PPP PG GP
Sbjct: 198 PHSRHGSAPPPPERSSGPPPPPPGRGP 224
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.1 bits (62), Expect = 9.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 1131 PRXXGXPGPPPXXKTLXXPPPGPGXGP 1211
P PPP ++ PPP PG GP
Sbjct: 110 PHSRHGSAPPPPERSSGPPPPPPGRGP 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,823,728
Number of Sequences: 59808
Number of extensions: 367699
Number of successful extensions: 1925
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4824226347
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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