Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B04_e602_04.seq
         (1491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    33   0.52 

>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
            protein T22D1.2 protein.
          Length = 302

 Score = 33.1 bits (72), Expect = 0.52
 Identities = 21/76 (27%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1141 RXPPAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPPQG 1320
            R PP PP      P PP G         GN  +   PP  G      P          +G
Sbjct: 62   RRPPPPPKGTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEG 121

Query: 1321 -XXRXXXPPXRGXXPP 1365
               R   PP +G   P
Sbjct: 122  NASRRPPPPPKGTGSP 137



 Score = 29.5 bits (63), Expect = 6.4
 Identities = 21/76 (27%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1141 RXPPAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPPQG 1320
            R PP PP      P PP G         GN  +   PP  G      P          +G
Sbjct: 125  RRPPPPPKGTGSPPPPPTGEPQDLS-GEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEG 183

Query: 1321 -XXRXXXPPXRGXXPP 1365
               R   PP +G   P
Sbjct: 184  NASRRPPPPPKGTGTP 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,763,855
Number of Sequences: 27780
Number of extensions: 316143
Number of successful extensions: 1744
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4287551336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)