Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B04_e602_04.seq
         (1491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   2.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   6.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 682 IKRSRLGSAIIEETHPKDKGNIKKNXSN 599
           +K + +G + I+  HPKDK  +     N
Sbjct: 189 LKDAWIGRSFIDYVHPKDKATLADQIKN 216


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 682 IKRSRLGSAIIEETHPKDKGNIKKNXSN 599
           +K + +G + I+  HPKDK  +     N
Sbjct: 184 LKDAWIGRSFIDYVHPKDKATLADQIKN 211


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 1133 PXXGXPRPPPP 1165
            P  G P PPPP
Sbjct: 1852 PVSGSPEPPPP 1862


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
            variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 1141 RXPPAPPPXXRPXPXPPL 1194
            R PP PP   R  P  PL
Sbjct: 636  RLPPLPPKRIRKMPSMPL 653


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,785
Number of Sequences: 438
Number of extensions: 4824
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52036875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)