Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B04_e602_04.seq
         (1491 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putativ...    80   4e-15
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa...    32   1.1  
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    30   3.4  
At2g18470.1 68415.m02151 protein kinase family protein contains ...    29   5.9  
At1g49270.1 68414.m05524 protein kinase family protein contains ...    29   7.9  

>At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putative
           similar to NADH-ubiquinone oxidoreductase chain 1 (EC
           1.6.5.3) (Swiss-Prot:Q01300) [Petunia hybrida]
          Length = 99

 Score = 79.8 bits (188), Expect = 4e-15
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
 Frame = +2

Query: 167 LGYIQIRKGPNKLGIVGLLQPFSDGIKLFTKEQTYPNYSNYFCYYFSPVXXXXXXXXXXX 346
           + ++Q RKGP+ +G  GLLQP +DG KL  KE   P+ +N+F +  +PV           
Sbjct: 1   MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRMAPVATFMLSLVARA 60

Query: 347 XXPYYFNIV--SFNLGVLFFFCRISLGVYTVIIAG*SSN 457
             P+ + +V    N+G+L+ F   SLGVY +IIAG SSN
Sbjct: 61  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSSN 99


>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
            protein B, putative / snRNP-B, putative / Sm protein B,
            putative similar to SP|P27048 Small nuclear
            ribonucleoprotein associated protein B (snRNP-B) (Sm
            protein B) (Sm-B) (SmB) {Mus musculus}
          Length = 254

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 30/98 (30%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
 Frame = +1

Query: 1132 PGXRXPPAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXR----QNPGXXXT 1299
            P  + PP PP   +  P PP G                 PP  GG  R      PG    
Sbjct: 157  PPGQMPPQPPFAGQGGPPPPYGMRPP--------YPGPPPPQYGGQQRPMMIPPPGGMMR 208

Query: 1300 XPXPPQGXXRXXXPPXR-GXXPPGXRERXQKXRXGXPP 1410
             P PP G      PP R G  PPG          G PP
Sbjct: 209  GPPPPHG--MQGPPPSRPGMPPPGGAPMFAPPHPGMPP 244


>At4g15200.1 68417.m02329 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 600

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 1132 PGXRXPPAPPPXXRPXPXPPLGXA 1203
            P    PP PP   RP P PP G A
Sbjct: 282  PPKPQPPPPPKIARPPPAPPKGAA 305


>At2g18470.1 68415.m02151 protein kinase family protein contains Pfam
            PF00069: Protein kinase domain
          Length = 633

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 27/106 (25%), Positives = 29/106 (27%), Gaps = 8/106 (7%)
 Frame = +1

Query: 1075 PXAPQTPXGXXXSK*L--XXXPGXRXPPAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHA 1248
            P +P  P G   S        P     P PP      P PP           GN      
Sbjct: 35   PPSPTPPQGDSSSSPPPDSTSPPAPQAPNPPNSSNNSPSPPSQGGGGERGNGGNNGGNDT 94

Query: 1249 PPL*GG----XXRQNPGXXXTXPXPP--QGXXRXXXPPXRGXXPPG 1368
            PP  G       R N     +   PP   G  R   PP  G    G
Sbjct: 95   PPSRGSPPSPPSRSNGDNGGSRSSPPGDTGGSRSDNPPSSGGSSGG 140


>At1g49270.1 68414.m05524 protein kinase family protein contains Pfam
            domain PF00069: Protein kinase domain
          Length = 699

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 21/94 (22%), Positives = 24/94 (25%)
 Frame = +1

Query: 1147 PPAPPPXXRPXPXPPLGXAXAXXLXXGNXXKXHAPPL*GGXXRQNPGXXXTXPXPPQGXX 1326
            PPAPPP   P P               N      PP         P      P PP    
Sbjct: 11   PPAPPPPSPPSPPSSNDQQTTSPPPSDNQETTSPPPPSSPDIAPPPQQQQESPPPP--LP 68

Query: 1327 RXXXPPXRGXXPPGXRERXQKXRXGXPPXXXXPQ 1428
                       PP   +   + +   PP    PQ
Sbjct: 69   ENSSDGSSSSSPPPPSDSSSQSQSPPPPSTSPPQ 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,771,879
Number of Sequences: 28952
Number of extensions: 296444
Number of successful extensions: 2185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3971099904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)