Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B03_e594_03.seq
         (1536 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    24   2.6  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   3.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   3.4  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 435 MNVYTIPILKIFFFSFLYVCLFVPGNLGNGWTDFDGT 545
           + VY  P+L++F + F Y  L V   +   W+  D T
Sbjct: 125 VKVYQAPVLQLFLYIFTY--LSVTCYVTYAWSPIDHT 159


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 336 HQSDNPVLLVIYTNK 380
           HQSD+PVL  I  NK
Sbjct: 71  HQSDDPVLSQIIANK 85


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
            castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 988  GXKSPPRPXMXGPXNPRTGKP 1050
            G KSP  P +  P + ++G P
Sbjct: 63   GRKSPSSPRISSPSSTKSGSP 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,462
Number of Sequences: 336
Number of extensions: 5288
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46193675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)