Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B03_e594_03.seq
         (1536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   3.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   9.1  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 628  FTISGFLRIIFDKFKPKLRAVASAIYRKVPSKSVQPFPRL 509
            F+IS   R +F  F P L+ V + IY K+P   +  FP +
Sbjct: 1462 FSISN--RFVFSLFMPHLKKVEAIIYDKLPGSDMS-FPSI 1498


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 420 FR*IHMNVYTIPILKIFFFSFLYVCLF 500
           FR  HM++ TIPIL + F  F +  +F
Sbjct: 187 FRSKHMSLVTIPILYLDFLQFSFPVVF 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,658,612
Number of Sequences: 5004
Number of extensions: 86972
Number of successful extensions: 209
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 862245690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)