Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B03_e594_03.seq
         (1536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47204| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_53570| Best HMM Match : Y_phosphatase (HMM E-Value=0)               30   5.7  

>SB_47204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -3

Query: 592 KFKPKLRAVASAIYRKVPSKSVQPFPRLPGTNRQTYKNEKKN 467
           K+  K + V+S  Y    S+S++  PR+  + R+T +NEK++
Sbjct: 62  KYSIKSKDVSSMQYNATLSRSIEIKPRISPSPRETARNEKRS 103


>SB_53570| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 2064

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = -2

Query: 701 NFLIK*SKNISHKFKHLTV---KRSDFIHNFRFFTNYFRQIQA*VTRSSFSYLPKSPVKI 531
           +F IK         K+LTV   K S  +HN   FTNYF  +QA   +    +  K  V  
Sbjct: 673 HFTIKYRAKGQRGAKYLTVDATKTSVVLHNLDKFTNYFIWVQASTKQGDGPFSDKHTVST 732

Query: 530 GPAVP 516
              VP
Sbjct: 733 AEDVP 737


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,478,117
Number of Sequences: 59808
Number of extensions: 624941
Number of successful extensions: 1178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5000293002
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)