Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B03_e594_03.seq
         (1536 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoi...    32   4.9  
M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.            32   4.9  
AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alph...    32   4.9  
AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alph...    32   4.9  

>U76604-1|AAB51499.1| 1497|Homo sapiens 180 kDa bullous pemphigoid
            antigen 2/type XVII collagen protein.
          Length = 1497

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 988  GXKSPPRPXMXGPXNPRTGKPPXXLPGXGGP 1080
            G + PP P + GP  PR G P   LPG  GP
Sbjct: 863  GPRGPPGPSIPGPPGPR-GPPGEGLPGPPGP 892


>M91669-1|AAA35605.1| 1532|Homo sapiens autoantigen protein.
          Length = 1532

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 988  GXKSPPRPXMXGPXNPRTGKPPXXLPGXGGP 1080
            G + PP P + GP  PR G P   LPG  GP
Sbjct: 898  GPRGPPGPSIPGPPGPR-GPPGEGLPGPPGP 927


>AL138761-5|CAC00589.1| 1497|Homo sapiens collagen type XVII alpha 1
            protein.
          Length = 1497

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 988  GXKSPPRPXMXGPXNPRTGKPPXXLPGXGGP 1080
            G + PP P + GP  PR G P   LPG  GP
Sbjct: 863  GPRGPPGPSIPGPPGPR-GPPGEGLPGPPGP 892


>AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alpha 1
            protein.
          Length = 1415

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 988  GXKSPPRPXMXGPXNPRTGKPPXXLPGXGGP 1080
            G + PP P + GP  PR G P   LPG  GP
Sbjct: 863  GPRGPPGPSIPGPPGPR-GPPGEGLPGPPGP 892


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,892,380
Number of Sequences: 237096
Number of extensions: 3176685
Number of successful extensions: 5416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5405
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22910218012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)