Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B03_e594_03.seq
         (1536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.19 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.99 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.19
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 973  GIQNXGXKSPPRPXMXGPXNPRTGKPPXXLPG 1068
            G Q    +SP  P    P NP  G PP   PG
Sbjct: 22   GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 315 ILGKVSSFPFCRHSKSCTDKMDYGVKIFDILNTY 214
           I+GK  S P   HSKS    ++   +++  LN Y
Sbjct: 478 IIGKDYSLPMVNHSKSSRINIERMKQVYQQLNKY 511


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 553 YRKVPSKSVQPFPRLPGTNRQTYKN 479
           Y    S+   P+PR P  NR   +N
Sbjct: 66  YGAAGSQQDMPYPRFPPYNRMDMRN 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,159
Number of Sequences: 438
Number of extensions: 7837
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53831250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)