Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B02_e586_04.seq
         (1524 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.28 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   3.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
            (isoform A) protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 0.28
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -1

Query: 1353 PXPGPGARPLSXXXGGXTGXPXEGXXXPXPPNXPXG 1246
            P PGP + P +    G +     G   P  PN   G
Sbjct: 119  PSPGPPSHPYTVISNGYSSPMSSGSYDPYSPNGKIG 154


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = -1

Query: 1353 PXPGPGARPLSXXXGGXTGXPXEGXXXPXPP 1261
            P P P A PL    G  T     G     PP
Sbjct: 90   PEPAPLASPLVQEPGSSTTSATSGAVMASPP 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,733
Number of Sequences: 336
Number of extensions: 5128
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45783975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)