Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B02_e586_04.seq
         (1524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.32 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 28/124 (22%), Positives = 34/124 (27%), Gaps = 4/124 (3%)
 Frame = -1

Query: 1476 GXPPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGP--GARPLSXXXGGX 1303
            G PP P         P P G  P+        P   P    P P P   A P+     G 
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178

Query: 1302 TGXPXEGXXXPXPPNXPXGXPXAHWX*KTXGXXLXXGPXX--PXAXPGGGVPXXPTXXGQ 1129
               P      P  P      P       + G      P    P   P  G+P  P    +
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPK---PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAK 1235

Query: 1128 GXPL 1117
              P+
Sbjct: 1236 APPV 1239



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 20/78 (25%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
 Frame = -1

Query: 1470 PPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPG-ARPLSXXXGGXTGX 1294
            PP P         P P G  P+        P   P    P P P  A P      G    
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161

Query: 1293 PXEGXXXPXPPNXPXGXP 1240
            P      P  P    G P
Sbjct: 1162 PKPSVAAPPVPAPSSGIP 1179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,307,143
Number of Sequences: 5004
Number of extensions: 70237
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 854316994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)