Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_B02_e586_04.seq
(1524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 41 0.002
07_01_0975 + 8223269-8224354 36 0.11
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 34 0.26
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 34 0.34
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 4.2
06_03_1414 + 30012195-30012360,30012448-30012830 30 5.5
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 5.5
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 9.7
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 29 9.7
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 29 9.7
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 41.1 bits (92), Expect = 0.002
Identities = 34/113 (30%), Positives = 35/113 (30%)
Frame = +2
Query: 1145 GXXGTPPPGXAXGXXGPXXRXXPXVFQXQCAXGXPXGXLGGXGSXXPSXGXPVXPPXXXX 1324
G G PP G G P G P LGG G + P
Sbjct: 111 GGGGGGPPSLPPGAGGGGGARPPAPGGGG-GGGAPRRVLGGGGGGG-ALARPPGGGRGGA 168
Query: 1325 RGRAPGPGXGXXXPGXXXGXXREXAXLRGPXPGGXGAXXFXGXXXGXGGXPPR 1483
GR PG G G PG G G PGG G G G GG P R
Sbjct: 169 LGRPPGGGGGGGGPGRAPGGGGGGGG-PGRAPGGGGGGGGLGGGGGEGGAPER 220
Score = 37.5 bits (83), Expect = 0.028
Identities = 33/96 (34%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Frame = +2
Query: 1241 GXPXGXLGGXGSXXPSXGX----PVXPPXXXXRGRA----PGPGXGXXXPGXXXGXXREX 1396
G P G LGG G+ P G P PP G A PG G G P G
Sbjct: 96 GAP-GPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG 154
Query: 1397 AXLRGPXPGGXG-AXXFXGXXXGXGGXPPRXPAXXG 1501
L P GG G A G GG P R P G
Sbjct: 155 GALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGG 190
Score = 32.7 bits (71), Expect = 0.79
Identities = 33/114 (28%), Positives = 33/114 (28%), Gaps = 1/114 (0%)
Frame = +2
Query: 1133 PXKVGXXGTPPPGXAXGXXGPXXRXXPXVFQXQCAXGXP-XGXLGGXGSXXPSXGXPVXP 1309
P G G PP G G R A P G GG P G
Sbjct: 122 PGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGG 181
Query: 1310 PXXXXRGRAPGPGXGXXXPGXXXGXXREXAXLRGPXPGGXGAXXFXGXXXGXGG 1471
P GRAPG G G PG G L G G G G GG
Sbjct: 182 P-----GRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGGGGGGG 230
Score = 32.3 bits (70), Expect = 1.0
Identities = 36/132 (27%), Positives = 41/132 (31%), Gaps = 2/132 (1%)
Frame = +2
Query: 1112 KTKGXPWPXKVGXXGTPPPGX-AXGXXGPXXRXXPXVFQXQCAXGXPXGXLGGXGSXXPS 1288
+ + P P + G PP G A G G P P G GG G+ P+
Sbjct: 75 EARTTPRPLPIKLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPA 134
Query: 1289 XGXPVXPPXXXXRGRAPGPGXGXXXPGXXXGXXREXAXLRGPXPGGXGAXXFXG-XXXGX 1465
G R G G G G R A R P GG G G
Sbjct: 135 PGGG---GGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGG 191
Query: 1466 GGXPPRXPAXXG 1501
GG P R P G
Sbjct: 192 GGGPGRAPGGGG 203
>07_01_0975 + 8223269-8224354
Length = 361
Score = 35.5 bits (78), Expect = 0.11
Identities = 23/87 (26%), Positives = 26/87 (29%)
Frame = +2
Query: 1241 GXPXGXLGGXGSXXPSXGXPVXPPXXXXRGRAPGPGXGXXXPGXXXGXXREXAXLRGPXP 1420
G P G G + P+ G P P G A GP G G G GP P
Sbjct: 266 GSPSGSPAGSPAGGPTAGGPASGPSSY--GAASGPAEGPSSSGAASGPA------EGPSP 317
Query: 1421 GGXGAXXFXGXXXGXGGXPPRXPAXXG 1501
G G P P+ G
Sbjct: 318 SGAAGPAEGPSSYGSTEGPSPSPSSSG 344
>12_02_0118 - 13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 34.3 bits (75), Expect = 0.26
Identities = 36/129 (27%), Positives = 40/129 (31%), Gaps = 10/129 (7%)
Frame = -1
Query: 1500 PXXAGXRGGXPPX-----PXXXPXNXXAPXP-PGXGPLXXAXSRXXPXXXPGXXXPXPGP 1339
P G G PP P P + + P P GP S+ P P P P
Sbjct: 118 PAFGGPPSGAPPAQAQRTPFGGPPSAMSQGPLPFGGPPAAVASQPPPFGGPPVAAAQPPP 177
Query: 1338 GARPLSXXXGGXTGXPXEGXXXPXPPNXPXGXP--XAHWX*KTXGXXL-XXGPXXPX-AX 1171
RP S G + P G P G P A T G GP P
Sbjct: 178 FGRPPSAAAAGQS-APLGGALFAAAQPPPFGGPPGAAPQPAPTGGLRTPYGGPPAPSQQV 236
Query: 1170 PGGGVPXXP 1144
P GG P P
Sbjct: 237 PFGGAPQWP 245
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.9 bits (74), Expect = 0.34
Identities = 27/87 (31%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Frame = -1
Query: 1491 AGXRGGXPPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXX-----XPXPGPGARP 1327
AG G PP P P AP PP P P P P PGPG P
Sbjct: 314 AGAGTGAPPPPPAHPA-APAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPP 372
Query: 1326 LSXXXGGXTGXPXEGXXXPXPPNXPXG 1246
G G P PP P G
Sbjct: 373 -------PPGAAGRGGGGPPPPALPGG 392
Score = 32.3 bits (70), Expect = 1.0
Identities = 29/107 (27%), Positives = 30/107 (28%), Gaps = 4/107 (3%)
Frame = -1
Query: 1434 APXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPLSXXXGGXTGXPXEGXXXPXPPNX 1255
A PP GP A P P P P G TG P P P
Sbjct: 274 AAPPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAP 333
Query: 1254 PXGXPXAHWX*KTXGXXLXXGPXXPXA----XPGGGVPXXPTXXGQG 1126
P P G P P A PG G P P G+G
Sbjct: 334 PPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRG 380
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 1500 PXXAGXRGGXPPXPXXXPXNXXAPXPPGXGP 1408
P AG G PP P P AP PPG GP
Sbjct: 340 PSAAGAGSGPPPPPP--PAAPAAPRPPGPGP 368
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 4.2
Identities = 31/120 (25%), Positives = 37/120 (30%), Gaps = 3/120 (2%)
Frame = -1
Query: 1470 PPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXX-XPGXXX--PXPGPGARPLSXXXGGXT 1300
PP P P + P PP P +R P PG P P P P T
Sbjct: 621 PPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPT 680
Query: 1299 GXPXEGXXXPXPPNXPXGXPXAHWX*KTXGXXLXXGPXXPXAXPGGGVPXXPTXXGQGXP 1120
G P PP P P A+ +T G + P P P P+ P
Sbjct: 681 GAATSSKGPPPPP--PPPLPPAN---RTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLP 735
>06_03_1414 + 30012195-30012360,30012448-30012830
Length = 182
Score = 29.9 bits (64), Expect = 5.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 1262 GGXGSXXPSXGXPVXPPXXXXRGRAPGPGXG 1354
GG G P G P+ PP GR+ P G
Sbjct: 135 GGGGGSPPPSGVPLHPPAAGGAGRSQWPAWG 165
>01_06_0565 + 30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/90 (22%), Positives = 23/90 (25%), Gaps = 3/90 (3%)
Frame = -1
Query: 1500 PXXAGXRGGXPPXPXXXP---XNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGAR 1330
P G G P P P + +P PG G P PG G
Sbjct: 398 PSTPGSGGYSPSTPCSAPPSPSSGTSPTTPGGGYSPSTPCNAPPSPSSDTSPTTPGGGNY 457
Query: 1329 PLSXXXGGXTGXPXEGXXXPXPPNXPXGXP 1240
P + G P G P P
Sbjct: 458 PPAPTIGNVPPSPSSGTSPSTPGGGCSSSP 487
>07_03_0792 - 21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = -1
Query: 1470 PPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARP 1327
PP P P AP PP R P PG P P +P
Sbjct: 586 PPEPSPPPAPKAAPPPPPPKSTGPGPPRPPPPAMPGSSKTRPPPPLKP 633
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 29.1 bits (62), Expect = 9.7
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -1
Query: 1467 PXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPL 1324
P P P A PPG P R P P P P PL
Sbjct: 288 PPPRATPTVSLAGPPPGFNPKRGLIGRGEAITLPESERPTPPPPPPPL 335
>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
Length = 301
Score = 29.1 bits (62), Expect = 9.7
Identities = 28/112 (25%), Positives = 30/112 (26%)
Frame = +2
Query: 1157 TPPPGXAXGXXGPXXRXXPXVFQXQCAXGXPXGXLGGXGSXXPSXGXPVXPPXXXXRGRA 1336
TP PG G G P P GG G PP +
Sbjct: 73 TPIPGHHGG--GGSSGTTPSHGGGPSGGALPSPSHGGAAPSH-GGGYGASPPVTP----S 125
Query: 1337 PGPGXGXXXPGXXXGXXREXAXLRGPXPGGXGAXXFXGXXXGXGGXPPRXPA 1492
PG G G P G + P GG G GG P PA
Sbjct: 126 PGGGYGGGSPAPSHGGGAYGSSPSTPSGGGSSPTPSHGGGAYGGGGAPATPA 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,202,612
Number of Sequences: 37544
Number of extensions: 623108
Number of successful extensions: 1512
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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