Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_B02_e586_04.seq
(1524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 43 6e-04
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 37 0.040
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 33 0.50
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain... 32 1.1
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 31 2.6
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 31 2.6
At1g61080.1 68414.m06877 proline-rich family protein 31 2.6
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 30 3.5
At4g34440.1 68417.m04894 protein kinase family protein contains ... 30 3.5
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 30 3.5
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 6.1
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 6.1
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 42.7 bits (96), Expect = 6e-04
Identities = 32/117 (27%), Positives = 33/117 (28%), Gaps = 1/117 (0%)
Frame = -1
Query: 1500 PXXAGXRGGXPPXPXXXPXN-XXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPL 1324
P GG PP P P P PP S P P P PG+ P
Sbjct: 413 PPTTPSPGGSPPSPSISPSPPITVPSPPTTP--SPGGSPPSPSIVPSPPSTTPSPGSPPT 470
Query: 1323 SXXXGGXTGXPXEGXXXPXPPNXPXGXPXAHWX*KTXGXXLXXGPXXPXAXPGGGVP 1153
S G P P P P P T G P P PGG P
Sbjct: 471 SPTTPTPGGSPPSSPTTPTPGGSPPSSPTT----PTPGGSPPSSPTTP--SPGGSPP 521
Score = 30.7 bits (66), Expect = 2.6
Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Frame = -1
Query: 1479 GGXPPXPXXXPX-NXXAPXPPG--XGPLXXAXSRXXPXXXPGXXXPXPGPGARPLSXXXG 1309
GG PP P P P PP P P P P P+S
Sbjct: 517 GGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQN 576
Query: 1308 GXTGXPXEGXXXPXPPNXP 1252
P P PP+ P
Sbjct: 577 SPPIIPSPPFTGPSPPSSP 595
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 36.7 bits (81), Expect = 0.040
Identities = 29/108 (26%), Positives = 31/108 (28%), Gaps = 2/108 (1%)
Frame = -1
Query: 1470 PPXPXXXPX-NXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGA-RPLSXXXGGXTG 1297
PP P P + P P PL P PG P P PG PL +
Sbjct: 177 PPSPSPTPGPDSPLPSPGPDSPLPLPGPPPSPSPTPGPDSPLPSPGPDSPLPLPGPPPSS 236
Query: 1296 XPXEGXXXPXPPNXPXGXPXAHWX*KTXGXXLXXGPXXPXAXPGGGVP 1153
P G P P P P GP P PG P
Sbjct: 237 SPTPGPDSPLPSPGPPPSPSP--TPGPDSPLPSPGPDSPLPSPGPDPP 282
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = -1
Query: 1479 GGXPPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPG 1336
G P P P +P P PL P PG P P PG
Sbjct: 222 GPDSPLPLPGPPPSSSPTPGPDSPLPSPGPPPSPSPTPGPDSPLPSPG 269
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 33.1 bits (72), Expect = 0.50
Identities = 26/70 (37%), Positives = 26/70 (37%)
Frame = +2
Query: 1262 GGXGSXXPSXGXPVXPPXXXXRGRAPGPGXGXXXPGXXXGXXREXAXLRGPXPGGXGAXX 1441
GG G P G P RG PG G G PG G RGP PGG G
Sbjct: 55 GGRGPRGPGFGPRGPGPWSGPRGPRPG-GGGGPGPGPWSGP-------RGPRPGGGGGPG 106
Query: 1442 FXGXXXGXGG 1471
G G GG
Sbjct: 107 -SGCGSGTGG 115
>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 411
Score = 31.9 bits (69), Expect = 1.1
Identities = 23/80 (28%), Positives = 23/80 (28%)
Frame = +2
Query: 1241 GXPXGXLGGXGSXXPSXGXPVXPPXXXXRGRAPGPGXGXXXPGXXXGXXREXAXLRGPXP 1420
G G GG G V P R P PG G G G GP
Sbjct: 29 GPAFGGRGGGPGRGYGGGPRVHGPGYGIGSRGPDPGPGFFFGGAGPGPGYGGGGGHGPGY 88
Query: 1421 GGXGAXXFXGXXXGXGGXPP 1480
GG G G G G P
Sbjct: 89 GGGGDGRGYGSETGGGNHGP 108
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 30.7 bits (66), Expect = 2.6
Identities = 20/68 (29%), Positives = 23/68 (33%)
Frame = +2
Query: 1142 VGXXGTPPPGXAXGXXGPXXRXXPXVFQXQCAXGXPXGXLGGXGSXXPSXGXPVXPPXXX 1321
+G G PG G GP P G P G +GG G P+ P
Sbjct: 327 MGPGGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGGPMGPMGGQGGSYPAV---QGLPMSG 383
Query: 1322 XRGRAPGP 1345
G PGP
Sbjct: 384 GGGYYPGP 391
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 30.7 bits (66), Expect = 2.6
Identities = 20/68 (29%), Positives = 23/68 (33%)
Frame = +2
Query: 1142 VGXXGTPPPGXAXGXXGPXXRXXPXVFQXQCAXGXPXGXLGGXGSXXPSXGXPVXPPXXX 1321
+G G PG G GP P G P G +GG G P+ P
Sbjct: 426 MGPGGPMGPGGPMGQGGPMGMMGPGGPMSMMGPGGPMGPMGGQGGSYPAV---QGLPMSG 482
Query: 1322 XRGRAPGP 1345
G PGP
Sbjct: 483 GGGYYPGP 490
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 30.7 bits (66), Expect = 2.6
Identities = 23/86 (26%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Frame = -1
Query: 1500 PXXAGXRGGXPPXPXXXPX-NXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPL 1324
P +G PP P P A PP P A + P PG P P P
Sbjct: 498 PAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPG 557
Query: 1323 SXXXGGXTGXPXEGXXXPXPPNXPXG 1246
+ P P PP P G
Sbjct: 558 TQAAPPPPPPPPMQNRAPSPPPMPMG 583
Score = 30.7 bits (66), Expect = 2.6
Identities = 22/80 (27%), Positives = 25/80 (31%)
Frame = -1
Query: 1470 PPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPLSXXXGGXTGXP 1291
PP P P AP PP P A + P PG P P P+ P
Sbjct: 523 PPPPPPPPRAAVAPPPPPPPP-GTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMP 581
Query: 1290 XEGXXXPXPPNXPXGXPXAH 1231
PP P P A+
Sbjct: 582 MGNSGSGGPPPPPPPMPLAN 601
Score = 29.5 bits (63), Expect = 6.1
Identities = 19/73 (26%), Positives = 20/73 (27%)
Frame = -1
Query: 1470 PPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPLSXXXGGXTGXP 1291
P P P AP PP PL + P P P P P P
Sbjct: 495 PTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPP 554
Query: 1290 XEGXXXPXPPNXP 1252
G PP P
Sbjct: 555 PPGTQAAPPPPPP 567
Score = 29.1 bits (62), Expect = 8.1
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Frame = -1
Query: 1500 PXXAGXRGGXPPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXP-------GXXXPXPG 1342
P GG PP P P A PP P+ A P P G P P
Sbjct: 581 PMGNSGSGGPPPPPPPMPLANGATPPPPPPPMAMANGAAGPPPPPPRMGMANGAAGPPPP 640
Query: 1341 PGA 1333
PGA
Sbjct: 641 PGA 643
>At5g45350.1 68418.m05567 proline-rich family protein contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = -1
Query: 1431 PXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPLSXXXGGXTGXPXEGXXXP 1270
P PPG P P PG P PG G P + GG P G P
Sbjct: 38 PPPPGAYPPAGYPPGAYPPA-PGGYPPAPGYGGYPPAPGYGGYPPAPGHGGYPP 90
>At4g34440.1 68417.m04894 protein kinase family protein contains Pfam
domain, PF00069: Protein kinase domain
Length = 670
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/75 (24%), Positives = 22/75 (29%)
Frame = -1
Query: 1476 GXPPXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPLSXXXGGXTG 1297
G PP P N +P P P + S P P P P + S +
Sbjct: 17 GTPPSNGTSPSNESSPPTPPSSPPPSSIS-APPPDISASFSPPPAPPTQETSPPTSPSSS 75
Query: 1296 XPXEGXXXPXPPNXP 1252
P P P P
Sbjct: 76 PPVVANPSPQTPENP 90
>At3g19430.1 68416.m02464 late embryogenesis abundant protein-related
/ LEA protein-related similar to late embryogenesis
abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 30.3 bits (65), Expect = 3.5
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +3
Query: 1398 PX*GAPXXGXXGPGXFXGGXGVXGXTPPAXLPPXGXP 1508
P G P G G G GG G TPPA +PP P
Sbjct: 49 PICGPPSPGDDGGGDDSGGDD-GGYTPPAPVPPVSPP 84
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to
gi|10880495|gb|AAG24277
Length = 176
Score = 29.5 bits (63), Expect = 6.1
Identities = 18/68 (26%), Positives = 20/68 (29%)
Frame = -1
Query: 1467 PXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPLSXXXGGXTGXPX 1288
P P P A PP P A P P P P P +P S + P
Sbjct: 87 PPPVASPPPPVASPPPATPP-PVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSSSPPL 145
Query: 1287 EGXXXPXP 1264
P P
Sbjct: 146 PSSDAPGP 153
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to
gi|10880495|gb|AAG24277
Length = 191
Score = 29.5 bits (63), Expect = 6.1
Identities = 18/68 (26%), Positives = 20/68 (29%)
Frame = -1
Query: 1467 PXPXXXPXNXXAPXPPGXGPLXXAXSRXXPXXXPGXXXPXPGPGARPLSXXXGGXTGXPX 1288
P P P A PP P A P P P P P +P S + P
Sbjct: 87 PPPVASPPPPVASPPPATPP-PVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSSSPPL 145
Query: 1287 EGXXXPXP 1264
P P
Sbjct: 146 PSSDAPGP 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,999,581
Number of Sequences: 28952
Number of extensions: 430301
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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