Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B01_e578_03.seq
         (1436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   6.4  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    27   8.5  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 223 HC*YLFLCMSTNFL 264
           HC YLF C+STN L
Sbjct: 130 HCVYLFYCISTNVL 143


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 971 TLNPISVFLLIIGICDSAY 915
           TLNP+SVFLL   I   AY
Sbjct: 203 TLNPVSVFLLFCAIAFLAY 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,031,770
Number of Sequences: 5004
Number of extensions: 77881
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 800832734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)