Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B01_e578_03.seq
         (1436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           29   6.8  
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     29   6.8  
03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027     29   9.0  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 684 ITIHWPSFYN-VXTGKTLALPNLIALQH 764
           I+  W  F N V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 1020 FRLAWXPVLKGLCPTGHTQPYLGLSFDYR 934
            F  A  PV  GL PTG   P  G  FD+R
Sbjct: 160  FASAVTPVGAGLIPTGAVSPVSGTPFDFR 188


>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
          Length = 635

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 429 YTNYFIYCNRNENIYTKHIKHVI 361
           Y NYF Y ++N+N Y  + KH++
Sbjct: 330 YHNYFGYPSQNDNYYEAYKKHIV 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,613,653
Number of Sequences: 37544
Number of extensions: 486808
Number of successful extensions: 900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4559628444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)