Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_B01_e578_03.seq
         (1436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    31   1.9  
At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containi...    29   5.7  
At1g63120.1 68414.m07133 rhomboid family protein contains PFAM d...    29   5.7  
At1g12750.1 68414.m01480 rhomboid family protein contains PFAM d...    29   9.9  

>At3g03680.1 68416.m00371 C2 domain-containing protein contains
            INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 205  WAQPRAHC*YLFLCMSTNFLFFLV 276
            W  PRA C ++  C+  +FLF++V
Sbjct: 952  WRDPRATCIFVVFCLFASFLFYIV 975


>At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 689

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +2

Query: 212 SRGHTASTF-----FSVCQRTFFFF*LFKNYNVFSLRF*L*PTSEHYVIII 349
           SRG T +TF      S+C +  F    ++ +N+    + L P+ EHY ++I
Sbjct: 613 SRGFTPNTFTFTAVLSICSQAGFVDEAYRFFNLMLRMYNLQPSEEHYSLVI 663


>At1g63120.1 68414.m07133 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 317

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 99  IIVCLFRIISGTAGPILTGLFLVVTELLHVIYDTF--MGAAAGTLLVPFSLYVNELSFFF 272
           I V L  +ISG  G IL+ LFL  +  +      F  +GA    LL  +++Y N+ +   
Sbjct: 147 IRVGLIYLISGLGGSILSSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALI 206

Query: 273 SYLRII 290
           + L II
Sbjct: 207 TLLFII 212


>At1g12750.1 68414.m01480 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 307

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 99  IIVCLFRIISGTAGPILTGLFL--VVTELLHVIYDTFMGAAAGTLLVPFSLYVNELSFFF 272
           I + L  +ISG  G IL+ LFL   ++          MGA    LL  +++Y ++L    
Sbjct: 134 IRIGLIYLISGFGGSILSALFLQKSISVGASGALLGLMGAMLSELLTNWTIYKSKLCALL 193

Query: 273 SYLRII 290
           S+L II
Sbjct: 194 SFLFII 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,983,753
Number of Sequences: 28952
Number of extensions: 391613
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3797605248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)