Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030731E7_A12_e665_02.seq
(1525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 36 0.019
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 32 0.18
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 31 0.55
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.73
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.3
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 3.9
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 28 3.9
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 28 3.9
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 5.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 6.8
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 27 6.8
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 27 6.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 9.0
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 35.5 bits (78), Expect = 0.019
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 57 RRKMTAT-IEERRLSSSLRKKELEERRLQPPKKEDCNRRRKKTA-TAEERRLQSPXKEDC 230
R+K+T + RR+ ++ R+K ERRL+ K E NR K+ + T + RR ++P
Sbjct: 191 RKKLTPEEMALRRIENARRRKNQSERRLEEEKMETINRLLKRQSNTGKPRRGRAPNNPTS 250
Query: 231 NRRRXKTAIAEER 269
+ A+ ++R
Sbjct: 251 DSISRSKAVPKDR 263
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 32.3 bits (70), Expect = 0.18
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +3
Query: 18 R*LQPPKKDDCNRRR--KMTATIEERRLSSSLRKKELEE-RRLQPPKKEDCNRRRK--KT 182
R + P + ++ RR M + + ER RK++ +E +RL+ KE+ ++K K
Sbjct: 683 RVISPEELEEIARRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKA 742
Query: 183 ATAEERRLQSPXKEDCNRRRXKTAIAEE 266
AEE+RLQ + + ++A A++
Sbjct: 743 RKAEEKRLQKERAKYAKQMSRESAHADQ 770
Score = 27.1 bits (57), Expect = 6.8
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +1
Query: 1 VQPPMKDDCNRRR--KMTATAEER*LQP-SKKEDYHQACGRRSWKKEDCNRRRK--KTAT 165
+ P ++ RR M + ER Q +KE +A + KE+ ++K K
Sbjct: 685 ISPEELEEIARRNVDPMVSELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARK 744
Query: 166 AEERRLQPPKKEDCNRRXKKTAIAEE 243
AEE+RLQ + + + +++A A++
Sbjct: 745 AEEKRLQKERAKYAKQMSRESAHADQ 770
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 30.7 bits (66), Expect = 0.55
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 39 KDDCNRRRKMTATIEER-----RLSSSLRKKELEERRLQPPKKEDCNRRRKKTATAEERR 203
KD+ RR+K E++ RL + KE E+RRL K+E + +RK+ A E+R
Sbjct: 131 KDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRL---KQEQIDAKRKEEE-AREKR 186
Query: 204 LQSPXKED 227
++ K+D
Sbjct: 187 MKETFKDD 194
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.3 bits (65), Expect = 0.73
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +3
Query: 36 KKDDCNRRRKMTATIEERRLSSSLRKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSP 215
KK R+K +++ L+K++ E R + +++ +K E +R +
Sbjct: 652 KKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKL 711
Query: 216 XKEDCNRRR----XKTAIAEERRLXSPK 287
KE+ RRR K + +ERRL K
Sbjct: 712 DKEEEERRRRELLEKESEEKERRLREAK 739
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 63 KMTATIEERRLSSSLRKKELEERRLQPPKKEDCNRRRKKTATAEERRLQ-SPXKEDCNRR 239
K A +EE + +R+ E+ +R L+ KED ++R+K E R L+ ++ N R
Sbjct: 200 KREAALEEFQSKLLIRENEINKRELKMNGKEDDLKKREK--DLENRLLKVEEHEKSLNER 257
Query: 240 RXKTAIAEE 266
K + A E
Sbjct: 258 ATKLSEANE 266
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +3
Query: 84 ERRLSSSLRKKELEERRLQPP----KKEDCNRRRKKTATAEERRLQSPXKE 224
ER+ SL KKE E RLQ ++E N RR++ E + QS ++
Sbjct: 102 ERQFYDSLEKKENERDRLQEKLRALQEESANLRRQRENRLREEQEQSKRRK 152
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 79 SKKEDYHQACGRRSWKKEDCNRRRKKTATAEE 174
+KK +H C + KK+ N+RRK+ E
Sbjct: 26 NKKSQFHTTCILQGLKKQKANQRRKQNLKRRE 57
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +3
Query: 84 ERRLSSSLRKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPXKEDCNRRRXKTAIAE 263
E+ L S+R+KE E+++ KE + +K ++RR + K+ ++ K A
Sbjct: 166 EQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRR-EENLKKRRESKKSKKGKAP 224
Query: 264 ERRLXSPK 287
+++ S K
Sbjct: 225 KKKKPSKK 232
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +2
Query: 92 IIIKPAEEGAGRKKTATAEERRLQPPKKEDCNRRRKKTAIAEXRRLQSPKXEDCNRRRK 268
I+I+ ++ + + K A E + + +K+D ++ K E +SPK + +++ K
Sbjct: 449 IVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKSK 507
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 63 KMTATIEERRL-SSSLRKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPXKEDCNRR 239
+M IE+++ SS L++ + E + + +K+D ++ K + E +SP K+ +++
Sbjct: 446 EMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKK 505
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +3
Query: 63 KMTATIEE-RRLSSSLRKKELEERRLQPPKKED--CNRRRKKTATAEERRLQ 209
K A +EE R+ + L+KKE E ++ + K + ++++K+ +RRLQ
Sbjct: 279 KRLAEVEEARKEEARLKKKEKERKKKEEMKAQGKYLSKKQKEQQALAQRRLQ 330
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 39 KDDCNRRRKMTATIEERRLSSSLRKKELEERRLQPPKKEDCNRRRKKTATA 191
KD ++ +EERRL ++E EER+L P ++++ R+K +A
Sbjct: 348 KDPTKIEAEVRKQVEERRLR---HERENEERKLTPEERKEKAFRKKDEDSA 395
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 105 LRKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSPXKEDCN 233
LRK E E+RRLQ + + N +R + + L++ E+ N
Sbjct: 214 LRKAEREKRRLQNERNRERNAQRVSASKLDLAILEAAEVEEIN 256
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/79 (22%), Positives = 40/79 (50%)
Frame = +3
Query: 36 KKDDCNRRRKMTATIEERRLSSSLRKKELEERRLQPPKKEDCNRRRKKTATAEERRLQSP 215
K++ ++R+ + E+ ++ + KELE+ + + ++ RR+ EER +
Sbjct: 99 KREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRK------EERDQKLR 152
Query: 216 XKEDCNRRRXKTAIAEERR 272
KE+ R R + + +ER+
Sbjct: 153 EKEEAQRLRQEQILNKERQ 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,572
Number of Sequences: 5004
Number of extensions: 22444
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 854316994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -