Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A11_e657_01.seq
         (1480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    31   0.53 
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    28   3.8  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 321 RPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 172
           +P+ R+   +  QN S     L+   C   + +K GIE    W+ QSP A
Sbjct: 455 QPVTRDFL-LAAQNASGIYLNLNEQYCLVMKDLKDGIEMKPKWLTQSPAA 503


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 637 CSSRIWPLRWQGSPCSASAWL 699
           C+S+I   +WQG  CS   W+
Sbjct: 292 CNSKIGSYKWQGLQCSCLQWV 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,056,098
Number of Sequences: 5004
Number of extensions: 71642
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 824584384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)