Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A11_e657_01.seq
         (1480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0389 + 3437383-3437651,3438279-3438396,3438914-3439018,343...    30   5.4  
07_03_1685 + 28645284-28645454,28645681-28647069                       29   9.4  
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664...    29   9.4  

>08_01_0389 +
           3437383-3437651,3438279-3438396,3438914-3439018,
           3439983-3440180,3440269-3440355
          Length = 258

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 774 VGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           VG I+F+ + FGC GA R   C+       M V+ V
Sbjct: 98  VGVILFITSIFGCAGASRGGCCLSFVSKFNMHVIPV 133


>07_03_1685 + 28645284-28645454,28645681-28647069
          Length = 519

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +1

Query: 379 CSATSLHRALEQCSPQFVTRNTHLLQSINDIAKKKKKNSRLVLSL 513
           CS TSL  +LE      + R TH LQ++ND  ++++ +S +++ +
Sbjct: 197 CSNTSLISSLEG----ELDRTTHKLQTLNDRQRRREDSSHILMEI 237


>06_03_1510 +
           30665857-30666038,30666137-30666236,30666358-30666438,
           30666514-30666618,30666722-30666916,30667440-30667501,
           30667870-30667885,30668007-30668068,30668933-30668951
          Length = 273

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 759 ISAMIVGGIVF-LIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           + A++  G+ + L+   GC  A   S C L  Y+I  +V+M+L
Sbjct: 63  VCALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTILAVVMMLL 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,185,206
Number of Sequences: 37544
Number of extensions: 540077
Number of successful extensions: 1232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4722057956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)