Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A11_e657_01.seq
         (1480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   1e-07
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   4e-07
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            52   1e-06
SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   1e-06
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   8e-06
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                49   8e-06
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)      46   8e-05
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-04
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)                45   1e-04
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)             43   7e-04
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.001
SB_47462| Best HMM Match : Ras (HMM E-Value=0)                         40   0.007
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)                 39   0.009
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)                38   0.027
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)          36   0.062
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.082
SB_38920| Best HMM Match : Tetraspannin (HMM E-Value=3.5e-07)          35   0.19 
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          33   0.58 
SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)                    30   5.4  
SB_36515| Best HMM Match : UPF0126 (HMM E-Value=0.73)                  29   7.2  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  29   9.5  

>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 55.6 bits (128), Expect = 1e-07
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = +3

Query: 699 VQLKATDIVTIADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLM 878
           VQLK  D V +    +    I  + VG  + L++FFGCCGAI+E  C+L T+   + +++
Sbjct: 307 VQLKIGDYVELQSVKYITGSIIIIAVGAFIALVSFFGCCGAIKEHRCLLATFFALLFIIL 366

Query: 879 VL 884
            +
Sbjct: 367 AV 368


>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +3

Query: 723 VTIADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           V IA  ++   P   + VG I+ L+AF GCCGA +E+ CML+ +   +L+L++L
Sbjct: 43  VEIASVNYATGPRVVIAVGFIIALVAFLGCCGAWKENKCMLICFFAFLLLLLIL 96


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 38/61 (62%)
 Frame = +3

Query: 702 QLKATDIVTIADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           ++K    ++I+   F       + VG I+ +IAFFGCCGA +E+ CML+ + I +L+++ 
Sbjct: 389 EIKFGPYISISSNDFMSGSRLLIAVGCIITIIAFFGCCGAWKENKCMLILFFILLLIVLG 448

Query: 882 L 884
           L
Sbjct: 449 L 449


>SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +3

Query: 699 VQLKATDIVTIADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCML 845
           VQLK  D + +    +    I  +  G ++ LI+FFGCCGAI+ES C+L
Sbjct: 7   VQLKTGDYIDLQSVKYATGYIIVIAAGALIALISFFGCCGAIKESRCLL 55


>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 21/46 (45%), Positives = 32/46 (69%)
 Frame = +3

Query: 717 DIVTIADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTY 854
           +I  +AD +FQ A I  + +GG++F+I  FGC GA+RE+ C+L  Y
Sbjct: 92  EITKLADLNFQPAVIF-LALGGLLFVITIFGCIGALRENRCLLTAY 136


>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 49.2 bits (112), Expect = 8e-06
 Identities = 17/38 (44%), Positives = 28/38 (73%)
 Frame = +3

Query: 741 SFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTY 854
           +++ API  +++G +  ++AF  CCGA++ES CML TY
Sbjct: 54  NYKTAPILCIVIGIVTVIVAFLACCGALKESQCMLGTY 91


>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
          Length = 211

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 17/56 (30%), Positives = 34/56 (60%)
 Frame = +3

Query: 717 DIVTIADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           + + ++   +       + VG I+ +++FFGC GA +E+ CML T+ + +L+L+ L
Sbjct: 43  EFIEVSSVPYATGSRLVIAVGVIIAIVSFFGCLGAWKENRCMLGTFFVLLLILLTL 98


>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 17/39 (43%), Positives = 29/39 (74%)
 Frame = +3

Query: 768 MIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           +IVGGI+F++ F GC GA+RE+ C+L  +S+ + ++  L
Sbjct: 51  IIVGGIMFILGFSGCIGALRENICLLKFFSVVLAIIFFL 89


>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 280

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +3

Query: 735 DTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           +++F    +   ++G ++F I FFGC GA+RE+ C L  Y   + + ++L
Sbjct: 71  ESTFHWPVVIFFVIGILMFFIGFFGCVGALRENTCFLTVYGTSVFLCLIL 120


>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
          Length = 187

 Score = 42.7 bits (96), Expect = 7e-04
 Identities = 16/57 (28%), Positives = 34/57 (59%)
 Frame = +3

Query: 702 QLKATDIVTIADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLV 872
           +++ +D + ++   +  A    + +G ++ +I F GCCGA++E  C+L T SI  ++
Sbjct: 57  RIQFSDYMKLSSHDYATAAYILIGIGFLIAIIGFIGCCGALKEHTCLLKTVSIKSIL 113


>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 756 PISAMI-VGGIVFLIAFFGCCGAIRESNCMLVT 851
           P   MI  G  V  + FFGCCGA++ES CML T
Sbjct: 313 PAWTMIGAGAFVTFVGFFGCCGAVKESRCMLAT 345


>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
          Length = 385

 Score = 39.5 bits (88), Expect = 0.007
 Identities = 14/50 (28%), Positives = 30/50 (60%)
 Frame = +3

Query: 702 QLKATDIVTIADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVT 851
           +++ +D + ++   +  A    + +G ++ +I F GCCGA++E  C+L T
Sbjct: 199 RIQFSDYMKLSSHDYATAAYILIGIGFLIAIIGFIGCCGALKEHTCLLKT 248


>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
          Length = 669

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 702 QLKATDIVTIADTSFQVAPISAMIVGG-IVFLIAFFGCCGAIRESNCMLVTYS 857
           ++ A +  ++   S   A  + MI  G +V  I F GCCGA++E+ C L+  S
Sbjct: 180 RVSANEYASLMGQSGFTAAANIMIAAGALVMFIGFVGCCGAVKENKCFLLLVS 232


>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 299

 Score = 37.5 bits (83), Expect = 0.027
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +3

Query: 768 MIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           +IVG ++FLIA  GC GA+RE+  +L  Y   + + ++L
Sbjct: 86  LIVGILLFLIATVGCIGALRENTILLAIYGGAVTLCLIL 124


>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
          Length = 286

 Score = 36.3 bits (80), Expect = 0.062
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 756 PISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           P      G  ++LI FFGC GA++E+   L +Y I +   ++
Sbjct: 73  PTLLFFTGFSLYLIVFFGCVGALKENTLFLASYGIFIFCCLI 114


>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 35.9 bits (79), Expect = 0.082
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 768 MIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           +IVG ++FLIA  GC GA+RE+  +L  Y   + + ++
Sbjct: 86  LIVGILLFLIATVGCIGALRENTILLAIYGGAVTLCLI 123


>SB_38920| Best HMM Match : Tetraspannin (HMM E-Value=3.5e-07)
          Length = 219

 Score = 34.7 bits (76), Expect = 0.19
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 729 IADTSFQVAPISAMI-VGGIVFLIAFFGCCGAIRESNCMLVTYSI 860
           + D+S+ V  +  MI +GG+V LI   GC G ++E   +L+++ I
Sbjct: 18  LLDSSWFVIIVGLMIGIGGVVVLICTCGCYGTVKEHRYLLISFLI 62


>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 33.1 bits (72), Expect = 0.58
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = +3

Query: 729 IADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           +++ ++   P   +  G +V ++   GC   I+E+  +LV+Y I ++++ +L
Sbjct: 51  LSNDNYVTVPGLMIAAGCLVIIVCVVGCVAVIKENRFILVSYLIMLVLIFIL 102


>SB_51856| Best HMM Match : DUF593 (HMM E-Value=3.3)
          Length = 314

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 261 RLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPI 121
           R  RS  PSR G+     Y +  +   PP D  V   R  + P P +
Sbjct: 207 RPRRSSSPSRPGLGIAKSYPRSGIRDGPPPDEYVEFLRSGVRPEPQV 253


>SB_36515| Best HMM Match : UPF0126 (HMM E-Value=0.73)
          Length = 150

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 771 IVGGIVFLIAFFGCCGAIRES 833
           I G ++F+I+F GC GA+RE+
Sbjct: 24  IAGVLMFVISFSGCLGALREN 44


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 364 IYPRRCSATSLHRALEQCSPQFVTRNTHLLQSINDIAKKKKKNS 495
           I PRR SA +   A+EQ   + V+   HL+ ++N   K K K++
Sbjct: 338 INPRRTSAPNPD-AIEQAHNRHVSNVVHLVPTVNQTGKDKDKDA 380


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,032,652
Number of Sequences: 59808
Number of extensions: 598554
Number of successful extensions: 1345
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4777275239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)