Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A11_e657_01.seq
         (1480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    54   3e-07
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    38   0.014
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    38   0.024
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    37   0.032
Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      37   0.042
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    36   0.073
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    30   3.6  
Z81533-8|CAB04332.1|  917|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 53.6 bits (123), Expect = 3e-07
 Identities = 24/89 (26%), Positives = 44/89 (49%)
 Frame = +3

Query: 612 GEFLVKYIXXXXXXXXXXXXXXXXXXXXXVQLKATDIVTIADTSFQVAPISAMIVGGIVF 791
           G  +VKY+                     +QLK  +++ I        PI  +++G +  
Sbjct: 5   GVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERLATPILLLVIGSLCT 64

Query: 792 LIAFFGCCGAIRESNCMLVTYSIXMLVLM 878
           L+ F GCCGAIRE+ C+ V++++ + +L+
Sbjct: 65  LLGFLGCCGAIRENYCLTVSFAVLLALLI 93


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 38.3 bits (85), Expect = 0.014
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 768 MIVGG-IVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           + VGG IV ++AF GCCGA +E   +L  YS  +++++ +
Sbjct: 86  LFVGGFIVIVVAFLGCCGAAKEWRPLLCCYSSCLMLILAI 125


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 37.5 bits (83), Expect = 0.024
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 768 MIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           +IVG + F+I F GC G++RE+   L  YS  + +L++
Sbjct: 89  LIVGFLTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLI 126


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 37.1 bits (82), Expect = 0.032
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 774 VGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVL 875
           VG ++FL+ FFGCCGA  ES  +L  +   +++L
Sbjct: 74  VGALLFLVGFFGCCGAGCESPVLLGLFIFIIVIL 107


>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 36.7 bits (81), Expect = 0.042
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 732 ADTSFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           A T F  + I  +++G ++ ++A  GCCG    S   L+ YS+ + +L+V
Sbjct: 218 APTXFAFSYIX-IVLGAVMMVVAMXGCCGITGRSRPFLIIYSMVVFLLLV 266


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 35.9 bits (79), Expect = 0.073
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 768 MIVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           +++G ++ ++A  GCCG    S   L+ YS+ + +L+V
Sbjct: 118 IVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLV 155


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 777 GGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           G I+ L+ +FGC GA + + C L  +   +++   L
Sbjct: 64  GAIIILVGYFGCIGAWKMNQCALAFFCCILILAFFL 99


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 771 IVGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVLN 887
           ++ GIVFL+ +F C  A+ + N  +  Y + MLVL + +
Sbjct: 42  LISGIVFLVLYFLCFLAVLKLNLKIPVYQL-MLVLSIFD 79


>Z81533-8|CAB04332.1|  917|Caenorhabditis elegans Hypothetical
           protein F36G9.13 protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 714 TDIVTIADT-SFQVAPISAMIVGGIVFLIAFFGCCGAIRESNCM 842
           T+   + DT S  V  ++ +I+G I+ +IAF  C    R+ NC+
Sbjct: 737 TEFAIVVDTNSTLVCTVTVLIIGSILGIIAFLWCW---RDQNCI 777


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,325,194
Number of Sequences: 27780
Number of extensions: 431332
Number of successful extensions: 1046
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4245924624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)