Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A11_e657_01.seq
         (1480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    64   2e-12
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.72 

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 64.5 bits (150), Expect = 2e-12
 Identities = 27/94 (28%), Positives = 50/94 (53%)
 Frame = +3

Query: 603 MGCGEFLVKYIXXXXXXXXXXXXXXXXXXXXXVQLKATDIVTIADTSFQVAPISAMIVGG 782
           M CG  ++KY+                     + L+   +    +T      I+ +++G 
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 783 IVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           I+F+I+FFGCCGAIRES+CM +T++  +L ++++
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLV 94


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 451 LQSINDI-AKKKKKNSRLVLSLVPNRHEEPYR 543
           ++ + D+ A+ KK+N +++L LVPN   + ++
Sbjct: 97  IKDLEDLTAEAKKQNLKVILDLVPNHTSDQHK 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 291,194
Number of Sequences: 438
Number of extensions: 5722
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51558375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)