Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A11_e657_01.seq
         (1480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63260.2 68414.m07151 senescence-associated family protein si...    31   2.6  
At1g63260.1 68414.m07152 senescence-associated family protein si...    31   2.6  
At1g32400.2 68414.m03998 senescence-associated family protein co...    31   2.6  
At1g32400.1 68414.m03997 senescence-associated family protein co...    31   2.6  
At1g74450.1 68414.m08625 expressed protein                             30   4.5  
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi...    29   5.9  

>At1g63260.2 68414.m07151 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 258

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 774 VGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           +GG +FLI+  G  GA + S  +L  Y   +L++++
Sbjct: 49  LGGFIFLISIIGFLGACKRSVALLWIYLAVLLIVLI 84


>At1g63260.1 68414.m07152 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 284

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 774 VGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMV 881
           +GG +FLI+  G  GA + S  +L  Y   +L++++
Sbjct: 49  LGGFIFLISIIGFLGACKRSVALLWIYLAVLLIVLI 84


>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 774 VGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           +G  +F+I+  GC G    S C L  YS+ +L+L++L
Sbjct: 88  IGVALFVISCCGCVGTCSRSVCCLSCYSL-LLILLIL 123


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 774 VGGIVFLIAFFGCCGAIRESNCMLVTYSIXMLVLMVL 884
           +G  +F+I+  GC G    S C L  YS+ +L+L++L
Sbjct: 88  IGVALFVISCCGCVGTCSRSVCCLSCYSL-LLILLIL 123


>At1g74450.1 68414.m08625 expressed protein
          Length = 397

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +1

Query: 226 STTGRTLTPVETTTTIRIILLKNLS*FPIYWPCSRST*SLHFNL*MIYPRRCSATSLHRA 405
           + T   + PV T TT+ + ++  L       PC      +HFN+   Y    S  SLH  
Sbjct: 242 TATNGLIVPVYTMTTVLLFVMWALV---AAIPCQDRGLQVHFNVPRNYQWGGSLMSLHDR 298

Query: 406 LEQCSPQFVTRNT-HLLQSINDIAKKKKKNSRLVLSL 513
           + + S +   +NT  LL+ I+   K  +  + LV S+
Sbjct: 299 IIEESKKRERKNTCGLLKEIHQFEKTSRLMNELVDSV 335


>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile: PF00515 TPR Domain (5
           copies)
          Length = 1064

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 276 SNRCCRLHRSQCPSRRGMKSGIE 208
           ++RCC ++ S+C ++ G+KS +E
Sbjct: 716 ASRCCIINVSECANKEGLKSALE 738


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,071,428
Number of Sequences: 28952
Number of extensions: 399812
Number of successful extensions: 791
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3932545536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)