Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A10_e649_02.seq
         (1508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    28   2.9  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   6.7  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   6.7  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 522 LSTYLAFTPAFYCFPIVLFLWVLDTLISIYNLHSFYS 632
           LST      A  C+  V FL +LDTL+   N+ S+ S
Sbjct: 282 LSTLKFLLSALVCYDCVSFLKLLDTLVLSVNVSSYPS 318


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 723 LYXNRHTIPSHPGLYPQRXSQPAFPVHWNAXASAPFLLGLGMGQSPD-PYL 872
           +Y +   +P++P   P     P +   WN  ASAP LL  G+    D PYL
Sbjct: 267 VYPSMKDVPNNP-FTPFSPINPYYAKSWNHTASAP-LLPPGLKNGSDYPYL 315


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 239 VLQFTNLFFVKLIMFSFSFNAILFVD 316
           ++QF+ +FF+ L  ++F+ N  LF+D
Sbjct: 902 IVQFSGVFFLYLKNYNFNDNQFLFMD 927


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,969,095
Number of Sequences: 5004
Number of extensions: 94758
Number of successful extensions: 202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 844406124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)