Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030731E7_A10_e649_02.seq
         (1508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0903 - 32630190-32630461,32631084-32631470,32631727-326318...    31   3.1  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   5.5  
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    29   7.2  
01_06_1470 - 37583293-37584074,37585432-37585705                       29   7.2  

>02_05_0903 -
           32630190-32630461,32631084-32631470,32631727-32631817,
           32632320-32632492,32632671-32632842
          Length = 364

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 820 PPPSSLGWEWGRVQTXTYAGPGXE 891
           PPP  L W+W ++Q  T  G G +
Sbjct: 20  PPPPQLDWDWDQLQLHTLGGGGGD 43


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 1446 PPPPXXXPPGXGXXXXXGXPGXP 1378
            PPPP   PPG G     G P  P
Sbjct: 302  PPPPHPLPPGAGAGAGTGAPPPP 324


>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -2

Query: 931 HXSSYGGIKSXIATPXXAPHRXGSGLCPIPNPRRKGAEAXAFQCTGKAGWEXLCG 767
           H + Y G  S  AT   A +     + PIP P   GA+A A +  G       CG
Sbjct: 260 HGTFYSGSVSVFATGFVAKNISFINVAPIPRPGDVGAQAVALRIGGDQAAFWGCG 314


>01_06_1470 - 37583293-37584074,37585432-37585705
          Length = 351

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 856  VQTXTYAGPGXEXLSGS*SPHSLNXAPXYSWPKGLAWPAEHTTQWGXGXXHTXP 1017
            V + T + PG    S   S  S++ A  ++W   L +PA     W     H  P
Sbjct: 293  VPSSTSSAPGNYYSSHGGSHQSMSAAEEWNWENALVYPAT-AASWSESSYHHHP 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,591,549
Number of Sequences: 37544
Number of extensions: 772208
Number of successful extensions: 1767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)